Strain identifier

BacDive ID: 23129

Type strain: No

Species: Acinetobacter septicus

Strain Designation: AK001

Strain history: CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain ANC 3649 <- CCUG <- Acinetobacter septicus: strain AK001

NCBI tax ID(s): 465797 (species)

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General

@ref: 19068

BacDive-ID: 23129

DSM-Number: 19415

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative

description: Acinetobacter septicus AK001 is an aerobe, Gram-negative bacterium that was isolated from blood of newborn boy.

NCBI tax id

  • NCBI tax id: 465797
  • Matching level: species

strain history

@refhistory
19068<- Y.-W. Tang; AK001 <- A. Kilic
123759CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain ANC 3649 <- CCUG <- Acinetobacter septicus: strain AK001

doi: 10.13145/bacdive23129.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter septicus
  • full scientific name: Acinetobacter septicus Kilic et al. 2008

@ref: 19068

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter septicus

full scientific name: Acinetobacter septicus Kilic et al. 2008

strain designation: AK001

type strain: no

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
123759negativeoval-shapedno
69480negative98.5

colony morphology

  • @ref: 19068
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
19068COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
19068BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
36258MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123759CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
19068positivegrowth37
36258positivegrowth30
60824positivegrowth30

Physiology and metabolism

oxygen tolerance

  • @ref: 60824
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69480no95.291
69481no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836917128adipate+assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683694853esculin-hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369beta-glucosidase-3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
19068----+-+/----------++/----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
19068blood of newborn boyAnkaraTurkeyTURAsia
60824Human blood,neonate (outbreak strain)AnkaraTurkeyTURAsia2006-03-22
123759Human, BloodGulhaneTurkeyTURAsia2006

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body Product#Fluids#Blood
#Host#Human#Male

taxonmaps

  • @ref: 69479
  • File name: preview.99_997.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_8;96_11;97_669;98_777;99_997&stattab=map
  • Last taxonomy: Acinetobacter septicus
  • 16S sequence: EF611420
  • Sequence Identity:
  • Total samples: 76
  • aquatic counts: 7
  • animal counts: 59
  • plant counts: 10

Safety information

risk assessment

  • @ref: 123759
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
19068Acinetobacter septicus strain AK001 clone 0106 16S ribosomal RNA gene, partial sequenceEF6114181531nuccore465797
19068Acinetobacter septicus strain AK001 clone 0110 16S ribosomal RNA gene, partial sequenceEF6114191529nuccore465797
19068Acinetobacter septicus strain AK001 clone 0112 16S ribosomal RNA gene, partial sequenceEF6114201529nuccore465797

Genome sequences

  • @ref: 66792
  • description: Acinetobacter septicus strain FDAARGOS_1401
  • accession: 465797.3
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 465797

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno98.5no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.515yes
69480spore-formingspore-formingAbility to form endo- or exosporesno95.291no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes88.427yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno98.637yes
69480flagellatedmotile2+Ability to perform flagellated movementno77.811no

External links

@ref: 19068

culture collection no.: DSM 19415, CIP 110587, CCUG 56015, CIP 110473, ANC 3649

literature

  • topic: Phylogeny
  • Pubmed-ID: 18160455
  • title: Acinetobacter septicus sp. nov. association with a nosocomial outbreak of bacteremia in a neonatal intensive care unit.
  • authors: Kilic A, Li H, Mellmann A, Basustaoglu AC, Kul M, Senses Z, Aydogan H, Stratton CW, Harmsen D, Tang YW
  • journal: J Clin Microbiol
  • DOI: 10.1128/JCM.01876-07
  • year: 2007
  • mesh: *Acinetobacter/classification/genetics/isolation & purification, Acinetobacter Infections/epidemiology/microbiology, Bacteremia/*epidemiology/microbiology, Bacterial Typing Techniques, Cross Infection/*epidemiology/microbiology, DNA-Directed RNA Polymerases/genetics, *Disease Outbreaks, Electrophoresis, Gel, Pulsed-Field, Female, Humans, Infant, Low Birth Weight, Infant, Newborn, Infant, Premature, Diseases/*epidemiology/microbiology, Infant, Very Low Birth Weight, *Intensive Care Units, Neonatal, Male, Microbial Sensitivity Tests, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Turkey/epidemiology
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitle
19068Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19415)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19415
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
36258Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8336
60824Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 56015)https://www.ccug.se/strain?id=56015
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
123759Curators of the CIPCollection of Institut Pasteur (CIP 110473)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110473