Name: Pseudozobellia thermophila DSM 19858
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23028

Type strain:

Species: Pseudozobellia thermophila

Culture col. no.: DSM 19858, JCM 11733, KCTC 22016, KMM 3531, CECT 7618

Strain history: <- OI Nedashkovskaya, Pacific Institute of Bioorganic Chemistry, Russia

NCBI tax ID(s): 192903 (species)

SI-ID 362324

DSM 19858, JCM 11733, KCTC 22016, CECT 7618

Section

Pseudozobellia thermophila DSM 19858 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from green alga Ulva fenestrata.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Pseudozobellia*
	Species	**Pseudozobellia thermophila**
	Full Scientific Name (LPSN)	Pseudozobellia thermophila Nedashkovskaya et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29017]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #29017]	Cell length	2.1 µm

[Ref.: #29017]	Cell width	0.3 µm

[Ref.: #29017]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #29017]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #29017]	Flagellum arrangement	gliding
[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #29017]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19075]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #19075]

Culture medium growth

[Ref.: #19075]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19075]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19075]	growth	28 °C
[Ref.: #29017]	growth	04-49 °C
[Ref.: #29017]	optimum	26.5 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #19075]	Temperature range	mesophilic
[Ref.: #29017]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29017]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #29017]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29017]		NaCl		optimum	4.5	%

[Ref.: #67770]	Observation	quinones: MK-6
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29017]	arabinose ChEBI	+	carbon source
[Ref.: #29017]	cellobiose ChEBI	+	carbon source
[Ref.: #29017]	esculin ChEBI	+	hydrolysis
[Ref.: #29017]	fucose ChEBI	+	carbon source
[Ref.: #29017]	galactose ChEBI	+	carbon source
[Ref.: #29017]	gelatin ChEBI	+	carbon source
[Ref.: #29017]	glucose ChEBI	+	carbon source
[Ref.: #29017]	lactose ChEBI	+	carbon source
[Ref.: #29017]	maltose ChEBI	+	carbon source
[Ref.: #29017]	mannitol ChEBI	+	carbon source
[Ref.: #29017]	mannose ChEBI	+	carbon source
[Ref.: #29017]	rhamnose ChEBI	+	carbon source
[Ref.: #29017]	sucrose ChEBI	+	carbon source
[Ref.: #29017]	tween 20 ChEBI	+	carbon source
[Ref.: #29017]	tween 40 ChEBI	+	carbon source
[Ref.: #29017]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29017]	acid phosphatase	+	3.1.3.2
[Ref.: #29017]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29017]	alpha-galactosidase	+	3.2.1.22
[Ref.: #29017]	catalase	+	1.11.1.6
[Ref.: #29017]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19075]	Sample type/isolated from	green alga Ulva fenestrata
[Ref.: #19075]	Host species	Ulva fenestrata
[Ref.: #19075]	Geographic location (country and/or sea, region)	Posiet Bay, Sea of Japan
[Ref.: #19075]	Country	Russia
[Ref.: #19075]	Country ISO 3 Code	RUS
[Ref.: #19075]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Green alga Ulva fenestrata in Posiet Bay
[Ref.: #67770]	Host species	Ulva fenestrata
[Ref.: #67770]	Geographic location (country and/or sea, region)	Sea of Japan

[Ref.: #67771]	Sample type/isolated from	From green alga `Ulva fenestrata`
[Ref.: #67771]	Geographic location (country and/or sea, region)	Pallada Bay, Gulf of Peter the Great, East Sea(Sea of Japan)
[Ref.: #67771]	Country	Russia
[Ref.: #67771]	Country ISO 3 Code	RUS
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Algae

#Green algae

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB084261 (>99% sequence identity) for Pseudozobellia thermophila subclade from Microbeatlas

Aquatic Samples	1011
Soil Samples	49
Animal Samples	90
Plant Samples	3
Total Samples	1153

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19075]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19075]	Pseudozobellia thermophila gene for 16S rRNA, partial sequence	AB084261	1401	ENA	192903 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudozobellia thermophila DSM 19858	GCA_900141855	scaffold	GenBank	192903 tax ID
[Ref.: #66792]	Pseudozobellia thermophila strain DSM 19858	192903.4	wgs	PATRIC	192903 tax ID	*
[Ref.: #66792]	Pseudozobellia thermophila DSM 19858	2622736519	draft	JGI IMG/M	192903 tax ID	*

[Ref.: #19075]	GC-content	49 mol%
[Ref.: #67770]	GC-content	49 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67771]	GC-content	49.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudozobellia thermophila DSM 19858 NCBI: GCA_900141855.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudozobellia thermophila strain DSM 19858 PATRIC: 192903.4
[Ref.: #69480]	motile	no	90.009	no
[Ref.: #69480]	gram-positive	no	98.08	yes
[Ref.: #69480]	anaerobic	no	98.778	yes
[Ref.: #69480]	aerobic	yes	86.418	yes
[Ref.: #69480]	halophile	no	77.194	no
[Ref.: #69480]	spore-forming	no	95.81	yes
[Ref.: #69480]	glucose-util	yes	87.361	yes
[Ref.: #69480]	flagellated	no	95.653	yes
[Ref.: #69480]	thermophile	no	99.43	yes
[Ref.: #69480]	glucose-ferment	no	88.778	no

Availability in culture collections External links

[Ref.: #19075]

Culture collection no.

DSM 19858, JCM 11733, KCTC 22016, KMM 3531, CECT 7618

[Ref.: #87268]

SI-ID 362324

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pelagihabitans pacificus gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from a deep-sea seamount.	Wang Q, Liu F, Zhang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.004315	2020	*
Phylogeny	Ulvibacterium marinum gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae, isolated from a culture of the green alga Ulva prolifera.	Zhang Z, Hu Z, Tang L, Wang Z, Zhang Y	Antonie Van Leeuwenhoek	10.1007/s10482-019-01239-x	2019	*
Phylogeny	Coraliitalea coralii gen. nov., sp. nov., a Marine Bacterium of the Family Flavobacteriaceae Isolated from the Hard Coral Galaxea fascicularis.	Yoon J, Yasumoto-Hirose M, Kasai H	Curr Microbiol	10.1007/s00284-017-1403-y	2017	*
Phylogeny	Spongitalea numazuensis gen. nov., sp. nov., a new marine bacterium of the family Flavobacteriaceae isolated from an unidentified marine sponge.	Mitra S, Nishijima M, Kasai H, Yokota A, Yoon J	J Gen Appl Microbiol	10.2323/jgam.58.379	2012	*
Phylogeny	Pseudozobellia thermophila gen. nov., sp. nov., a bacterium of the family Flavobacteriaceae, isolated from the green alga Ulva fenestrata.	Nedashkovskaya OI, Suzuki M, Lee JS, Lee KC, Shevchenko LS, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.004143-0	2009	*

References

#19075

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19858

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29017

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25447 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87268

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID362324.1 )

#25447

IJSEM 806 2009 ( DOI 10.1099/ijs.0.004143-0 , PubMed 19329611 )

* These data were automatically processed and therefore are not curated

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Pseudozobellia thermophila DSM 19858

Pseudozobellia thermophila strain DSM 19858

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