Cruoricaptor ignavus (DSM 25479, CCUG 62025, 2012475 No2)

Name: Cruoricaptor ignavus (DSM 25479, CCUG 62025, 2012475 No2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23029

Type strain

Strain Designation 2012475 No2

Culture col. no. DSM 25479 CCUG 62025 2012475 No2 IMMIB L-12475

NCBI tax ID(s) 1118202

Special Collections DSMZ CCUG

History DSMZ <- A. F. Yassin, Inst. Med. Microbiology and Immunology, Univ. Bonn, Germany; IMMIB L-12475 <- M. Aravena-Roman, Queen Elizabeth II Medical Center, PathWest Lab. Med. , Div. of Microbiol. and Infectious Diseases, WA, Australia; strain 2012475 No2

Links

Cruoricaptor ignavus 2012475 No2 is a microaerophile bacterium that was isolated from blood culture of a human with bacteraemia.

microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399073

DSM 25479,CCUG 62025

@ref 20215

Last LPSN update 2026-05-29 08:30:21

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Cruoricaptor

Species Cruoricaptor ignavus

Full scientific name Cruoricaptor ignavus Yassin et al. 2013

BacDive ID	Other strains from **Cruoricaptor ignavus** (1)	Type strain
144087	C. ignavus CCUG 22895

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	92
125439	90.431	negative
125438	99.455	negative

Colony morphology

62780

Incubation period2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19200	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
19200	positive	growth	28
62780	positive	growth	37

Physiology and metabolism

Oxygen tolerance

62780

Oxygen tolerancemicroaerophile

Spore formation

@ref	Spore formation	Confidence
125438		91.975
125439		98.791

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	denitrification	100	2 of 2
66794	glycogen metabolism	100	5 of 5
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	vitamin K metabolism	100	5 of 5
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	teichoic acid biosynthesis	100	1 of 1
66794	kanosamine biosynthesis II	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	ethanol fermentation	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	acetate fermentation	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	palmitate biosynthesis	95.45	21 of 22
66794	starch degradation	90	9 of 10
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	peptidoglycan biosynthesis	80	12 of 15
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	CMP-KDO biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	photosynthesis	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	purine metabolism	68.09	64 of 94
66794	serine metabolism	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	alanine metabolism	65.52	19 of 29
66794	glycolysis	64.71	11 of 17
66794	glutamate and glutamine metabolism	64.29	18 of 28
66794	heme metabolism	64.29	9 of 14
66794	glutathione metabolism	64.29	9 of 14
66794	citric acid cycle	64.29	9 of 14
66794	isoleucine metabolism	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	gluconeogenesis	62.5	5 of 8
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	flavin biosynthesis	60	9 of 15
66794	propionate fermentation	60	6 of 10
66794	methylglyoxal degradation	60	3 of 5
66794	pyrimidine metabolism	60	27 of 45
66794	non-pathway related	57.89	22 of 38
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	pantothenate biosynthesis	50	3 of 6
66794	methionine metabolism	50	13 of 26
66794	threonine metabolism	50	5 of 10
66794	suberin monomers biosynthesis	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	vitamin B1 metabolism	46.15	6 of 13
66794	leucine metabolism	46.15	6 of 13
66794	vitamin B6 metabolism	45.45	5 of 11
66794	proline metabolism	45.45	5 of 11
66794	lipid metabolism	45.16	14 of 31
66794	valine metabolism	44.44	4 of 9
66794	cysteine metabolism	44.44	8 of 18
66794	mevalonate metabolism	42.86	3 of 7
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	glycine metabolism	40	4 of 10
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	lipoate biosynthesis	40	2 of 5
66794	sulfate reduction	38.46	5 of 13
66794	phenylalanine metabolism	38.46	5 of 13
66794	isoprenoid biosynthesis	38.46	10 of 26
66794	ketogluconate metabolism	37.5	3 of 8
66794	oxidative phosphorylation	37.36	34 of 91
66794	pentose phosphate pathway	36.36	4 of 11
66794	lysine metabolism	35.71	15 of 42
66794	cyanate degradation	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	L-lactaldehyde degradation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	formaldehyde oxidation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	nitrate assimilation	33.33	3 of 9
66794	octane oxidation	33.33	1 of 3
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	histidine metabolism	31.03	9 of 29
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	arginine metabolism	29.17	7 of 24
66794	propanol degradation	28.57	2 of 7
66794	degradation of hexoses	27.78	5 of 18
66794	metabolism of disaccharids	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	polyamine pathway	26.09	6 of 23
66794	biotin biosynthesis	25	1 of 4
66794	butanoate fermentation	25	1 of 4
66794	degradation of sugar alcohols	25	4 of 16
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	tryptophan metabolism	23.68	9 of 38
66794	molybdenum cofactor biosynthesis	22.22	2 of 9
66794	arachidonic acid metabolism	22.22	4 of 18
66794	degradation of pentoses	21.43	6 of 28
66794	tyrosine metabolism	21.43	3 of 14

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Infection	#Patient	#Blood culture
#Host	#Human	-

Isolation

@ref	Sample type	Host species	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
19200	blood culture of a human with bacteraemia	Homo sapiens		Perth	Australia	AUS	Australia and Oceania
62780	Human blood	Homo sapiens	2011-03-01	Perth	Australia	AUS	Australia and Oceania

Taxonmaps

69479

Global distribution of 16S sequence HE614680 (>99% sequence identity) for Cruoricaptor ignavus subclade from Microbeatlas

Aquatic Samples	158
Soil Samples	60
Animal Samples	1902
Plant Samples	19
Total Samples	2139

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
19200	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2700988704 annotated assembly for Cruoricaptor ignavus DSM 25479	contig	GCA_900141665	1118202.4	2700988704	1118202	72.35

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19200	Cruoricaptor ignavus partial 16S rRNA gene, type strain IMMIB L-12475T	HE614680	1535		1118202

GC content

@ref	GC-content (mol%)	Method
19200	45.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2700988704 annotated assembly for Cruoricaptor ignavus DSM 25479
NCBI: GCA_900141665

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	83.75	no
125439	motility	BacteriaNetⓘ	no	81.33	no
125439	gram_stain	BacteriaNetⓘ	negative	90.43	no
125439	spore_formation	BacteriaNetⓘ	no	98.79	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cruoricaptor ignavus strain DSM 25479
PATRIC: 1118202.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.46	no
125438	anaerobic	anaerobicⓘ	no	94.90	yes
125438	spore-forming	spore-formingⓘ	no	91.98	no
125438	aerobic	aerobicⓘ	yes	72.42	no
125438	thermophilic	thermophileⓘ	no	93.60	yes
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cruoricaptor ignavus gen. nov., sp. nov., a novel bacterium of the family Flavobacteriaceae isolated from blood culture of a man with bacteraemia.	Yassin AF, Inglis TJ, Hupfer H, Siering C, Schumann P, Busse HJ, Aravena-Roman M	Syst Appl Microbiol	10.1016/j.syapm.2012.08.003	2012

References

#19200	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25479
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#62780	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62025
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Cruoricaptor ignavus (DSM 25479, CCUG 62025, 2012475 No2)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900141665

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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