Name: Lonsdalea populi NY041
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23014

Type strain:

Species: Lonsdalea populi

Strain Designation: NY041

Culture col. no.: DSM 25467

Strain history: <- T. Lakatos, Nemaform Ltd., Nagykálló, Hungary <- T. Tóth and T. Lakatos, Research and Extension Centre for Fruit Growing, Hungary

NCBI tax ID(s): 1172565 (species)

SI-ID 386948

LMG 27397, DSM 25467

Other strains from Lonsdalea populi

L. populi NY060, DSM 25466, NCAIM B 02483, ... (type strain)
L. populi NY011, DSM 25468

Section

Lonsdalea populi NY041 is a mesophilic plant pathogen that was isolated from bark canker of poplar tree.

mesophilic
plant pathogen
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Pectobacteriaceae*
	Genus	*Lonsdalea*
	Species	**Lonsdalea populi**
	Full Scientific Name (LPSN)	Lonsdalea populi (Tóth et al. 2013) Li et al. 2017

Synonym

Lonsdalea quercina subsp. populi

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #19345]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19345]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #19345]

Culture medium growth

[Ref.: #19345]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19345]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19345]			growth	28 °C

[Ref.: #19345]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19345]	Sample type/isolated from	bark canker of poplar tree
[Ref.: #19345]	Geographic location (country and/or sea, region)	Nyársapát
[Ref.: #19345]	Country	Hungary
[Ref.: #19345]	Country ISO 3 Code	HUN
[Ref.: #19345]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Bark

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ291574 (>99% sequence identity) for Lonsdalea from Microbeatlas

Aquatic Samples	154
Soil Samples	95
Animal Samples	1104
Plant Samples	208
Total Samples	1561

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19345]	Pathogenicity (plant)	yes
[Ref.: #19345]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19345]	Lonsdalea quercina subsp. populi strain NY041 16S ribosomal RNA gene, partial sequence	JQ291574	1495	ENA	1172565 tax ID

Availability in culture collections External links

[Ref.: #19345]

Culture collection no.

DSM 25467

[Ref.: #87254]

SI-ID 386948

References

#19345

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25467

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87254

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID386948.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Lonsdalea populi in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF