Name: Lonsdalea populi NY060
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23013

Type strain:

Species: Lonsdalea populi

Strain Designation: NY060

Culture col. no.: DSM 25466, NCAIM B 02483, CFCC 13125, LMG 27349

Strain history: <- T. Lakatos, Nemaform Ltd., Nagykálló, Hungary; NY060 <- T. Tóth and T. Lakatos, Research and Extension Centre for Fruit Growing, Hungary

NCBI tax ID(s): 1172565 (species)

SI-ID 382488

LMG 27349, DSM 25466

Other strains from Lonsdalea populi

L. populi NY041, DSM 25467
L. populi NY011, DSM 25468

Section

Lonsdalea populi NY060 is a mesophilic, Gram-negative, motile plant pathogen that forms circular colonies and was isolated from bark canker of poplar Populus x euramericana.

colony-forming
Gram-negative
motile
rod-shaped
mesophilic
plant pathogen
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Pectobacteriaceae*
	Genus	*Lonsdalea*
	Species	**Lonsdalea populi**
	Full Scientific Name (LPSN)	Lonsdalea populi (Tóth et al. 2013) Li et al. 2017

Synonym

Lonsdalea quercina subsp. populi

Information on morphological and physiological properties Morphology

[Ref.: #30717]	Gram stain	negative
[Ref.: #65502]	Gram stain	negative

[Ref.: #30717]	Cell length	1.5 µm
[Ref.: #65502]	Cell length	1.0-2.0 µm

[Ref.: #30717]	Cell width	0.5 µm
[Ref.: #65502]	Cell width	0.5-1.0 µm

[Ref.: #30717]	Cell shape	rod-shaped
[Ref.: #65502]	Cell shape	rod-shaped

[Ref.: #30717]	Motility	yes
[Ref.: #65502]	Motility	yes

[Ref.: #65502]	Flagellum arrangement	peritrichous

[Ref.: #65502]	Colony color	light cream
[Ref.: #65502]	Colony shape	circular
[Ref.: #65502]	Cultivation medium used	TSA

[Ref.: #30717]

Pigment production

yes

Multimedia content

[Ref.: #19344]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19344]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #19344]

Culture medium growth

[Ref.: #19344]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19344]

Culture medium composition

expand / minimize

[Ref.: #65502]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #65502]

Culture medium growth

		Temperature
[Ref.: #19344]	growth	28 °C
[Ref.: #30717]	growth	08-44 °C
[Ref.: #30717]	optimum	32 °C
[Ref.: #65502]	growth	8-44 °C
[Ref.: #65502]	optimum	30-34 °C

[Ref.: #19344]	Temperature range	mesophilic
[Ref.: #30717]	Temperature range	mesophilic
[Ref.: #65502]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30717]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65502]	2-oxoglutarate ChEBI	+/-	carbon source
[Ref.: #65502]	arbutin ChEBI	+	builds acid from
[Ref.: #30717]	aspartate ChEBI	+	carbon source
[Ref.: #30717]	cellobiose ChEBI	+	carbon source
[Ref.: #65502]	cellobiose ChEBI	+/-	carbon source
[Ref.: #65502]	citrate ChEBI	-	carbon source
[Ref.: #65502]	D-fructose ChEBI	+	builds acid from
[Ref.: #65502]	D-fructose ChEBI	+	carbon source
[Ref.: #65502]	D-galactose ChEBI	+	builds acid from
[Ref.: #65502]	D-galactose ChEBI	+	carbon source
[Ref.: #65502]	D-gluconate ChEBI	+	carbon source
[Ref.: #65502]	D-glucose ChEBI	+	builds acid from
[Ref.: #65502]	D-glucose ChEBI	+	carbon source
[Ref.: #65502]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #65502]	D-mannitol ChEBI	+	builds acid from
[Ref.: #65502]	D-mannitol ChEBI	+	carbon source
[Ref.: #65502]	D-mannose ChEBI	+	builds acid from
[Ref.: #65502]	D-mannose ChEBI	+	carbon source
[Ref.: #65502]	D-psicose ChEBI	+	carbon source
[Ref.: #65502]	D-ribose ChEBI	+	builds acid from
[Ref.: #65502]	esculin ferric citrate	+	builds acid from
[Ref.: #65502]	formate ChEBI	-	carbon source
[Ref.: #30717]	fructose ChEBI	+	carbon source
[Ref.: #30717]	galactose ChEBI	+	carbon source
[Ref.: #65502]	gentiobiose ChEBI	+/-	carbon source
[Ref.: #30717]	gluconate ChEBI	+	carbon source
[Ref.: #30717]	glucose ChEBI	+	carbon source
[Ref.: #30717]	glutamate ChEBI	+	carbon source
[Ref.: #30717]	glycerol ChEBI	+	carbon source
[Ref.: #65502]	glycerol ChEBI	+	builds acid from
[Ref.: #65502]	glycerol ChEBI	+	carbon source
[Ref.: #65502]	L-glutamate ChEBI	+/-	carbon source
[Ref.: #65502]	L-histidine ChEBI	-	carbon source
[Ref.: #65502]	L-leucine ChEBI	-	carbon source
[Ref.: #65502]	L-phenylalanine ChEBI	-	carbon source
[Ref.: #65502]	L-threonine ChEBI	-	carbon source
[Ref.: #65502]	lactate ChEBI	-	carbon source
[Ref.: #30717]	mannitol ChEBI	+	carbon source
[Ref.: #30717]	mannose ChEBI	+	carbon source
[Ref.: #65502]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #65502]	methyl beta-D-glucopyranoside ChEBI	+	carbon source
[Ref.: #30717]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #30717]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #65502]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #30717]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #65502]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #65502]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #65502]	nitrate ChEBI	-	reduction
[Ref.: #65502]	potassium gluconate ChEBI	+	builds acid from
[Ref.: #65502]	raffinose ChEBI	-	builds acid from
[Ref.: #65502]	raffinose ChEBI	-	carbon source
[Ref.: #65502]	salicin ChEBI	+	builds acid from
[Ref.: #30717]	succinate ChEBI	+	carbon source
[Ref.: #30717]	sucrose ChEBI	+	carbon source
[Ref.: #65502]	sucrose ChEBI	+	builds acid from
[Ref.: #65502]	sucrose ChEBI	+	carbon source
[Ref.: #30717]	trehalose ChEBI	+	carbon source
[Ref.: #65502]	trehalose ChEBI	+	builds acid from
[Ref.: #65502]	trehalose ChEBI	+	carbon source
[Ref.: #65502]	turanose ChEBI	-	builds acid from
[Ref.: #65502]	turanose ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #65502]	acetoin ChEBI	no
[Ref.: #65502]	hydrogen sulfide ChEBI	no
[Ref.: #65502]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65502]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65502]	beta-galactosidase	-	3.2.1.23
[Ref.: #30717]	catalase	+	1.11.1.6
[Ref.: #65502]	catalase	+	1.11.1.6
[Ref.: #65502]	cytochrome oxidase	-	1.9.3.1
[Ref.: #65502]	gelatinase	-
[Ref.: #65502]	lysine decarboxylase	-	4.1.1.18
[Ref.: #65502]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #65502]	tryptophan deaminase	-	4.1.99.1
[Ref.: #65502]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19344]	Sample type/isolated from	bark canker of poplar Populus x euramericana
[Ref.: #19344]	Host species	Populus x euramericana
[Ref.: #19344]	Geographic location (country and/or sea, region)	Mikebuda (19° 40' 17.2'' N, 47° 09' 43.6'' E)
[Ref.: #19344]	Country	Hungary
[Ref.: #19344]	Country ISO 3 Code	HUN
[Ref.: #19344]	Continent	Europe
[Ref.: #19344]	Geographic location	47.1621°/19.6714°

[Ref.: #65502]	Sample type/isolated from	Populus x euramericana
[Ref.: #65502]	Geographic location (country and/or sea, region)	Mikebuda
[Ref.: #65502]	Country	Hungary
[Ref.: #65502]	Country ISO 3 Code	HUN
[Ref.: #65502]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Bark

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ291575 (>99% sequence identity) for Lonsdalea from Microbeatlas

Aquatic Samples	154
Soil Samples	95
Animal Samples	1104
Plant Samples	208
Total Samples	1561

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19344]	Pathogenicity (plant)	yes
[Ref.: #19344]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65502]	16S rRNA gene sequence	LUTM00000000		GenBank
[Ref.: #19344]	Lonsdalea quercina subsp. populi strain NY060 16S ribosomal RNA gene, partial sequence	JQ291575	1503	ENA	1172565 tax ID

[Ref.: #19344]	GC-content	55.4 mol%	sequence analysis
[Ref.: #65502]	GC-content	55.4 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #19344]

Culture collection no.

DSM 25466, NCAIM B 02483, CFCC 13125, LMG 27349

[Ref.: #87253]

SI-ID 382488

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Elevation of three subspecies of Lonsdalea quercina to species level: Lonsdalea britannica sp. nov., Lonsdalea iberica sp. nov. and Lonsdalea populi sp. nov.	Li Y, Xue H, Guo LM, Koltay A, Palacio-Bielsa A, Chang J, Xie S, Yang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.002353	2017	*

References

#19344

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25466

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30717

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27048 (see below)

#65502

Yong Li, Han Xue, Li-min Guo, Andr as Koltay, Ana Palacio-Bielsa, Jupu Chang, Shoujiang Xie and Xuqi Yang: Elevation of three subspecies of Lonsdalea quercina to species level: Lonsdalea britannica sp. nov., Lonsdalea iberica sp. nov. and Lonsdalea populi sp. nov.. IJSEM 67: 4680 - 4684 2017 ( DOI 10.1099/ijsem.0.002353 , PubMed 28954646 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87253

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID382488.1 )

#27048

IJSEM 2309 2013 ( DOI 10.1099/ijs.0.042911-0 , PubMed 23159756 )

* These data were automatically processed and therefore are not curated

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