Name: Flexivirga alba ST13
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 22985

Type strain:

Species: Flexivirga alba

Strain Designation: ST13

Culture col. no.: DSM 24460, NBRC 107580

Strain history: <- M. Hamada, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Japan; NBRC 107580 <- T. Sugimoto <- T. Sugiyama, Tokyo Univ. of Technology, Tokyo, Japan

NCBI tax ID(s): 702742 (species)

SI-ID 401330

DSM 24460

Section

Flexivirga alba ST13 is a mesophilic bacterium that was isolated from soil near wastewater treatment facilities of an electroplating plant.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Dermacoccaceae*
	Genus	*Flexivirga*
	Species	**Flexivirga alba**
	Full Scientific Name (LPSN)	Flexivirga alba Anzai et al. 2012

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19128]

Culture medium

RICH MEDIUM (DSMZ Medium 736)

[Ref.: #19128]

Culture medium growth

[Ref.: #19128]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19128]

Culture medium composition

expand / minimize

[Ref.: #19128]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #19128]

Culture medium growth

[Ref.: #19128]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19128]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19128]			growth	28 °C

[Ref.: #19128]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19128]	Sample type/isolated from	soil near wastewater treatment facilities of an electroplating plant
[Ref.: #19128]	Geographic location (country and/or sea, region)	Gifu prefecture, Seki
[Ref.: #19128]	Country	Japan
[Ref.: #19128]	Country ISO 3 Code	JPN
[Ref.: #19128]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Plant (Factory)
#Engineered	#Waste	#Water treatment plant
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB539735 (>99% sequence identity) for Flexivirga alba subclade from Microbeatlas

Aquatic Samples	123
Soil Samples	356
Animal Samples	324
Plant Samples	80
Total Samples	883

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19128]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19128]	Flexivirga alba gene for 16S rRNA, partial sequence	AB539735	1483	ENA	702742 tax ID

[Ref.: #19128]

GC-content

67.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #19128]

Culture collection no.

DSM 24460, NBRC 107580

[Ref.: #87231]

SI-ID 401330

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flexivirga caeni sp. nov., isolated from activated sludge.	Keum DH, Lee YJ, Lee SY, Im WT	Int J Syst Evol Microbiol	10.1099/ijsem.0.003910	2020	*
Phylogeny	Flexivirga lutea sp. nov., isolated from the faeces of a crested ibis, Nipponia nippon, and emended description of the genus Flexivirga.	Kang W, Hyun DW, Kim PS, Shin NR, Kim HS, Lee JY, Tak EJ, Roh JR, Park SD, Shim HE, Bae JW	Int J Syst Evol Microbiol	10.1099/ijsem.0.001238	2016	*
Phylogeny	Flexivirga endophytica sp. nov., an endophytic actinobacterium isolated from a leaf of Sweet Basil.	Gao R, Liu BB, Yang W, Song PF, Chen W, Salam N, Duan YQ, Li QQ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001211	2016	*
Phylogeny	Flexivirga alba gen. nov., sp. nov., an actinobacterial taxon in the family Dermacoccaceae.	Anzai K, Sugiyama T, Sukisaki M, Sakiyama Y, Otoguro M, Ando K	J Antibiot (Tokyo)	10.1038/ja.2011.62	2011	*

References

#19128

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24460

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87231

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401330.1 )

* These data were automatically processed and therefore are not curated

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