Strain identifier
BacDive ID: 22985
Type strain: 
Species: Flexivirga alba
Strain Designation: ST13
Strain history: <- M. Hamada, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Japan; NBRC 107580 <- T. Sugimoto <- T. Sugiyama, Tokyo Univ. of Technology, Tokyo, Japan
NCBI tax ID(s): 702742 (species)
version 8.1 (current version)
General
@ref: 19128
BacDive-ID: 22985
DSM-Number: 24460
keywords: 16S sequence, Bacteria, mesophilic
description: Flexivirga alba ST13 is a mesophilic bacterium that was isolated from soil near wastewater treatment facilities of an electroplating plant.
NCBI tax id
- NCBI tax id: 702742
- Matching level: species
strain history
- @ref: 19128
- history: <- M. Hamada, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Japan; NBRC 107580 <- T. Sugimoto <- T. Sugiyama, Tokyo Univ. of Technology, Tokyo, Japan
doi: 10.13145/bacdive22985.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Dermacoccaceae
- genus: Flexivirga
- species: Flexivirga alba
- full scientific name: Flexivirga alba Anzai et al. 2012
@ref: 19128
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Dermacoccaceae
genus: Flexivirga
species: Flexivirga alba
full scientific name: Flexivirga alba Anzai et al. 2012
strain designation: ST13
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 19128 | RICH MEDIUM (DSMZ Medium 736) | yes | https://mediadive.dsmz.de/medium/736 | Name: RICH MEDIUM (DSMZ Medium 736) Composition: Agar 20.0 g/l Bacto peptone 10.0 g/l Yeast extract 5.0 g/l Malt extract 5.0 g/l Casamino acids 5.0 g/l Glycerol 2.0 g/l Meat extract 2.0 g/l MgSO4 x 7 H2O 1.0 g/l Tween 80 0.05 g/l Distilled water |
| 19128 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
culture temp
- @ref: 19128
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 19128
- sample type: soil near wastewater treatment facilities of an electroplating plant
- geographic location: Gifu prefecture, Seki
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Plant (Factory) |
| #Engineered | #Waste | #Water treatment plant |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_115404.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_20999;97_42858;98_78021;99_115404&stattab=map
- Last taxonomy: Flexivirga alba subclade
- 16S sequence: AB539735
- Sequence Identity:
- Total samples: 883
- soil counts: 356
- aquatic counts: 123
- animal counts: 324
- plant counts: 80
Safety information
risk assessment
- @ref: 19128
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19128
- description: Flexivirga alba gene for 16S rRNA, partial sequence
- accession: AB539735
- length: 1483
- database: ena
- NCBI tax ID: 702742
GC content
- @ref: 19128
- GC-content: 67.4
- method: high performance liquid chromatography (HPLC)
External links
@ref: 19128
culture collection no.: DSM 24460, NBRC 107580
straininfo link
- @ref: 87231
- straininfo: 401330
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21811262 | Flexivirga alba gen. nov., sp. nov., an actinobacterial taxon in the family Dermacoccaceae. | Anzai K, Sugiyama T, Sukisaki M, Sakiyama Y, Otoguro M, Ando K | J Antibiot (Tokyo) | 10.1038/ja.2011.62 | 2011 | Actinobacteria/*classification/genetics/isolation & purification, DNA, Bacterial, Electroplating, *RNA, Bacterial, *RNA, Ribosomal, 16S, *Soil Microbiology, Waste Disposal, Fluid | Enzymology |
| Phylogeny | 27264701 | Flexivirga endophytica sp. nov., an endophytic actinobacterium isolated from a leaf of Sweet Basil. | Gao R, Liu BB, Yang W, Song PF, Chen W, Salam N, Duan YQ, Li QQ, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001211 | 2016 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Ocimum basilicum/*microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plant Leaves/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 27295948 | Flexivirga lutea sp. nov., isolated from the faeces of a crested ibis, Nipponia nippon, and emended description of the genus Flexivirga. | Kang W, Hyun DW, Kim PS, Shin NR, Kim HS, Lee JY, Tak EJ, Roh JR, Park SD, Shim HE, Bae JW | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001238 | 2016 | Actinomycetales/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, Birds/*microbiology, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 31800390 | Flexivirga caeni sp. nov., isolated from activated sludge. | Keum DH, Lee YJ, Lee SY, Im WT | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003910 | 2020 | Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Sewage/*microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 19128 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24460) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24460 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 87231 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID401330.1 | StrainInfo: A central database for resolving microbial strain identifiers |