Name: Brevundimonas diminuta Pickett K-248
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2298

Type strain:

Species: Brevundimonas diminuta

Strain Designation: Pickett K-248

Culture col. no.: DSM 7234, ATCC 11568, CCEB 513, CCEB 516, CCM 2657, CCTM 1850, CCUG 1187, CCUG 1256, CCUG 1427, CECT 317, CIP 63.27, CNCTC Ps170/79, HNCMB 173005, IAM 1513, IMET 10409, JCM 2788, LMG 2088, LMG 2089, NCIB 9393, NCTC 8545, NRRL B-1496, USCC 1337, VKM B-893, AJ 2067, Hugh 342, Komagata KS 0016, BCRC 11894, CGMCC 1.1798, IAM 12691, IFO 12697, KCTC 12488, LMG 1793, NBRC 12697, NCIMB 9393, VKM B-1297

Strain history: K. Komagata KS 0016 <-- AJ 2067 <-- ATCC 11568 <-- E. Leifson.

NCBI tax ID(s): 751586 (strain), 293 (species)

Other strains from Brevundimonas diminuta

B. diminuta DSM 1635, ATCC 19146, CCUG 24715, ...
B. diminuta Uro-30, DSM 17668
B. diminuta STI05036(IMET), pMp1,
B. diminuta STI05037(IMET), pMp2,
B. diminuta CIP 102687
B. diminuta CIP 71.29
B. diminuta CCUG 154, LMG 11061
B. diminuta CCUG 248, LMG 11147
B. diminuta CCUG 269 C, LMG 9559
B. diminuta CCUG 557 B
B. diminuta CCUG 1189, LMG 11065
B. diminuta CCUG 1364, LMG 11149
B. diminuta CCUG 1376, LMG 11062
B. diminuta CCUG 2031, ATCC 13184, LMG 9561, ...
B. diminuta CCUG 2868, LMG 9562
B. diminuta CCUG 11208, LMG 11150
B. diminuta CCUG 14202, LMG 9563
B. diminuta CCUG 14331
B. diminuta CCUG 14333
B. diminuta CCUG 14334
B. diminuta CCUG 22113, LMG 11052
B. diminuta CCUG 25811, LMG 11064
B. diminuta CCUG 28328, LMG 11136
B. diminuta CCUG 28329, LMG 11137
B. diminuta CCUG 28330, LMG 11138
B. diminuta CCUG 28331, LMG 11139
B. diminuta CCUG 28900
B. diminuta CCUG 32082
B. diminuta CCUG 33033
B. diminuta CCUG 38720
B. diminuta CCUG 38918
B. diminuta CCUG 43529
B. diminuta CCUG 44439
B. diminuta CCUG 47360 B
B. diminuta CCUG 47440
B. diminuta CCUG 52019
B. diminuta CCUG 57248
B. diminuta CCUG 57463
B. diminuta CCUG 58204
B. diminuta JCM 20562, IAM 12413
B. diminuta JCM 20563, IAM 12414
B. diminuta JCM 20564, IAM 12415
B. diminuta JCM 20565, IAM 12416
B. diminuta JCM 20567, IAM 12418
B. diminuta JCM 2789
B. diminuta JCM 2790
B. diminuta JCM 2791
B. diminuta JCM 2792
B. diminuta JCM 2793, IAM 12417
B. diminuta JCM 2794

Section

Brevundimonas diminuta Pickett K-248 is a mesophilic human pathogen that was isolated from water.

human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Caulobacteraceae*
	Genus	*Brevundimonas*
	Species	**Brevundimonas diminuta**
	Full Scientific Name (PNU)	Brevundimonas diminuta (Leifson and Hugh 1954) Segers et al. 1994

Synonym

Pseudomonas diminuta

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3069]

Culture medium

NUTRIENT AGAR (OXOID CM3) WITH PHOSPHATE (DSMZ Medium 605a)

[Ref.: #3069]

Culture medium growth

[Ref.: #3069]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #3069]

Culture medium composition

expand / minimize

[Ref.: #41997]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41997]

Culture medium growth

[Ref.: #41997]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #3069]	growth	26 °C
[Ref.: #41997]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #3069]	Temperature range	mesophilic
[Ref.: #41997]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3069]

Name of produced compound

Q10 coenzyme

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68369]		indole ChEBI	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API 20NE
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65600]

Fatty acid	Percentage	ECL
C18:1 ω6c	55.1	17.858
C16:0	29.9	16
C19:0 CYCLO ω8c	4.4	18.9
C12:0 3OH	2.2	13.455
C16:1 ω7c	1.9	15.819
C13:0 ISO 2OH	1.6	13.814
C14:0	1.4	14
C18:1 2OH	1	19.088
C15:0	0.9	15
C17:0	0.8	17
C17:1 ω8c	0.6	16.792
C18:0	0.4	18
C17:1 ω6c	0.3	16.862
C20:2 ω6,9c	0.3	19.735
C15:1 ω8c	0.2	14.792

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #65600]	7238	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #65600]	3609	-	+	+	+	-	+	-	-	+	+	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3069]	Sample type/isolated from	water
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ227778 (>99% sequence identity) for Brevundimonas diminuta from Microbeatlas

Aquatic Samples	792
Soil Samples	454
Animal Samples	2639
Plant Samples	115
Total Samples	4000

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3069]	Pathogenicity (human)	yes, in single cases
[Ref.: #3069]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Brevundimonas diminuta partial 16S rRNA gene, type strain ATCC 11568T	FR775451	1334	ENA	293 tax ID	*
[Ref.: #20218]	Pseudomonas diminuta 16S ribosomal RNA	M59064	1445	ENA	293 tax ID	*
[Ref.: #20218]	Brevundimonas diminuta gene for 16S rRNA, strain: IAM 12691	AB021415	1452	ENA	293 tax ID	*
[Ref.: #20218]	Brevundimonas diminuta gene for 16S rRNA, partial sequence, strain: JCM 2788	AB594766	1385	ENA	293 tax ID	*
[Ref.: #20218]	Brevundimonas diminuta DNA for 16S ribosomal RNA, strain LMG 2089 (T)	AJ227778	1418	ENA	751586 tax ID	*
[Ref.: #20218]	Brevundimonas diminuta gene for 16S rRNA, partial sequence, strain: NBRC 12697	AB680325	1388	ENA	293 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Brevundimonas diminuta ATCC 11568	751586.3	wgs	PATRIC	751586 tax ID	*
[Ref.: #66792]	Brevundimonas diminuta strain NCTC8545	293.17	wgs	PATRIC	293 tax ID	*
[Ref.: #66792]	Brevundimonas diminuta strain TVB1	293.26	wgs	PATRIC	293 tax ID	*
[Ref.: #66792]	Brevundimonas diminuta ATCC 11568	651285001	draft	JGI IMG/M	751586 tax ID	*
[Ref.: #66792]	Brevundimonas diminuta NCTC 8545	2814123189	draft	JGI IMG/M	293 tax ID	*
[Ref.: #67770]	Brevundimonas diminuta ATCC 11568 ATCC 11568	GCA_000204035	scaffold	GenBank	751586 tax ID

[Ref.: #67770]

GC-content

67.3 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #3069]

Culture collection no.

DSM 7234, ATCC 11568, CCEB 513, CCEB 516, CCM 2657, CCTM 1850, CCUG 1187, CCUG 1256, CCUG 1427, CECT 317, CIP 63.27, CNCTC Ps170/79, HNCMB 173005, IAM 1513, IMET 10409, JCM 2788, LMG 2088, LMG 2089, NCIB 9393, NCTC 8545, NRRL B-1496, USCC 1337, VKM B-893, AJ 2067, Hugh 342, Komagata KS 0016, BCRC 11894, CGMCC 1.1798, IAM 12691, IFO 12697, KCTC 12488, LMG 1793, NBRC 12697, NCIMB 9393, VKM B-1297

[Ref.: #20218]

Associated Passport(s) in StrainInfo

122341, 43143, 43144, 43145, 43146, 43147, 43148, 43149, 43150, 43151, 230053, 43153, 43154, 43156, 43157, 43158, 43160, 43161, 43163, 43164, 43165, 43167, 122343

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Glucuronosyl diacylglycerol of Pseudomonas diminuta ATCC 11568. In vitro biosynthesis from UDP-glucuronate and diacylglycerol.	Shaw JM, Pieringer RA	J Biol Chem	S0021-9258(17)40277-8	1977	*
Cultivation	[Transfer of various markers in Lactobacilli during transformation of plasmid DNA and joint cultivation].	Tiurin MV, Shenderov BA, Grigor'ev AE, Zhukov VG, Navashin SM	Antibiot Khimioter		1990	*
Pathogenicity	Cytokine induction by lipopolysaccharide (LPS) corresponds to lethal toxicity and is inhibited by nontoxic Rhodobacter capsulatus LPS.	Loppnow H, Libby P, Freudenberg M, Krauss JH, Weckesser J, Mayer H	Infect Immun	10.1128/iai.58.11.3743-3750.1990	1990	*
Phylogeny	Isolation of 9-hydroxy-delta-tetradecalactone from lipid A of Pseudomonas diminuta and Pseudomonas vesicularis.	Arata S, Hirayama T, Kasai N, Itoh T, Ohsawa A	FEMS Microbiol Lett	10.1016/0378-1097(89)90512-0	1989	*
Enzymology	Structural heterogeneity regarding local Shwartzman activity of lipid A.	Mashimo J, Tanaka C, Arata S, Akiyama Y, Hata S, Hirayama T, Egawa K, Kasai N	Microbiol Immunol	10.1111/j.1348-0421.1988.tb01427.x	1988	*
Enzymology	Peptidoglycan of Rhodopseudomonas viridis: partial lack of N-acetyl substitution of glucosamine.	Schmelzer E, Weckesser J, Warth R, Mayer H	J Bacteriol	10.1128/jb.149.1.151-155.1982	1982	*
Pathogenicity	Brevundimonas diminuta infections and its resistance to fluoroquinolones.	Han XY, Andrade RA	J Antimicrob Chemother	10.1093/jac/dki139	2005	*
Enzymology	Chemical resistance of the gram-negative bacteria to different sanitizers in a water purification system.	Mazzola PG, Martins AM, Penna TC	BMC Infect Dis	10.1186/1471-2334-6-131	2006	*
Phylogeny	Brevundimonas naejangsanensis sp. nov., a proteolytic bacterium isolated from soil, and reclassification of Mycoplana bullata into the genus Brevundimonas as Brevundimonas bullata comb. nov.	Kang SJ, Choi NS, Choi JH, Lee JS, Yoon JH, Song JJ	Int J Syst Evol Microbiol	10.1099/ijs.0.011700-0	2009	*
Phylogeny	Brevundimonas vancanneytii sp. nov., isolated from blood of a patient with endocarditis.	Estrela AB, Abraham WR	Int J Syst Evol Microbiol	10.1099/ijs.0.015651-0	2009	*

References

#3069

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7234

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41997 ; Curators of the CIP;
#65600 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 1427

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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