Brevundimonas diminuta Komagata KS 0016, Pickett K-248 | Type strain | DSM 7234, ATCC 11568, CCEB 513, CCEB 516, CCM 2657, CCTM 1850, CCUG 1187, CCUG 1256, CCUG 1427, CECT 317, CIP 63.27, CNCTC Ps170/79, HNCMB 173005, IAM 1513, IMET 10409, JCM 2788, LMG 2088, LMG 2089, NCIB 9393, NCTC 8545, NRRL B-1496, USCC 1337, VKM B-893, AJ 2067, Hugh 342

Strain identifier

BacDive ID: 2298

Type strain:

Species: Brevundimonas diminuta

Strain Designation: Komagata KS 0016, Pickett K-248

Culture col. no.: DSM 7234, ATCC 11568, CCEB 513, CCEB 516, CCM 2657, CCTM 1850, CCUG 1187, CCUG 1256, CCUG 1427, CECT 317, CIP 63.27, CNCTC Ps170/79, HNCMB 173005, IAM 1513, IMET 10409, JCM 2788, LMG 2088, LMG 2089, NCIB 9393, NCTC 8545, NRRL B-1496, USCC 1337, VKM B-893, AJ 2067, Hugh 342

Strain history: 1963, O. Lysenko, Inst. Biol., Prague, Czechoslovakia: strain CCEB 513, Pseudomonas diminuta

Section

Name and taxonomic classification
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Safety information
Sequence information

External links

Brevundimonas diminuta Komagata KS 0016 is a mesophilic human pathogen that was isolated from water.

human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Proteobacteria
	Class	Alphaproteobacteria
	Order	Caulobacterales
	Family	Caulobacteraceae
	Genus	Brevundimonas
	Species	Brevundimonas diminuta
	Full Scientific Name (PNU)	Brevundimonas diminuta (Leifson and Hugh 1954) Segers et al. 1994

Synonym

Pseudomonas diminuta

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #3069]

Culture medium

NUTRIENT AGAR (OXOID CM3) WITH PHOSPHATE (DSMZ Medium 605a)

[Ref.: #3069]

Culture medium growth

[Ref.: #3069]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #41997]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41997]

Culture medium growth

[Ref.: #41997]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3069]			growth	26 ̊C
[Ref.: #41997]			growth	30 ̊C

[Ref.: #3069]	Temperature range	mesophilic
[Ref.: #41997]	Temperature range	mesophilic

Information on physiology and metabolismPhysiology and metabolism

[Ref.: #3069]

Name of produced compound

Q10 coenzyme

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65600]

Fatty acid	Percentage	ECL
C18:1 ω6c	55.1	17.858
C16:0	29.9	16
C19:0 CYCLO ω8c	4.4	18.9
C12:0 3OH	2.2	13.455
C16:1 ω7c	1.9	15.819
C13:0 ISO 2OH	1.6	13.814
C14:0	1.4	14
C18:1 2OH	1	19.088
C15:0	0.9	15
C17:0	0.8	17
C17:1 ω8c	0.6	16.792
C18:0	0.4	18
C17:1 ω6c	0.3	16.862
C20:2 ω6,9c	0.3	19.735
C15:1 ω8c	0.2	14.792

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #65600]	7238	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #65600]	3609	-	+	+	+	-	+	-	-	+	+	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #3069]

Sample type/isolated from

water

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsSafety information

[Ref.: #3069]	Pathogenicity (human)	yes
[Ref.: #3069]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Brevundimonas diminuta partial 16S rRNA gene, type strain ATCC 11568T	FR775451	1334	ENA	293 tax ID	*
[Ref.: #20218]	Pseudomonas diminuta 16S ribosomal RNA	M59064	1445	ENA	293 tax ID	*
[Ref.: #20218]	Brevundimonas diminuta gene for 16S rRNA, strain: IAM 12691	AB021415	1452	ENA	293 tax ID	*
[Ref.: #20218]	Brevundimonas diminuta gene for 16S rRNA, partial sequence, strain: JCM 2788	AB594766	1385	ENA	293 tax ID	*
[Ref.: #20218]	Brevundimonas diminuta DNA for 16S ribosomal RNA, strain LMG 2089 (T)	AJ227778	1418	ENA	751586 tax ID	*
[Ref.: #20218]	Brevundimonas diminuta gene for 16S rRNA, partial sequence, strain: NBRC 12697	AB680325	1388	ENA	293 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Brevundimonas diminuta NCTC8545	GCA_900445995	contig	GenBank	293 tax ID	*
[Ref.: #66792]	Brevundimonas diminuta ATCC 11568	GCA_000204035	scaffold	GenBank	751586 tax ID	*
[Ref.: #66792]	Brevundimonas diminuta ATCC 11568	751586.3	wgs	PATRIC	751586 tax ID	*
[Ref.: #66792]	Brevundimonas diminuta strain NCTC8545	293.17	wgs	PATRIC	293 tax ID	*

Availability in culture collectionsExternal links

[Ref.: #3069]

Culture collection no.

DSM 7234, ATCC 11568, CCEB 513, CCEB 516, CCM 2657, CCTM 1850, CCUG 1187, CCUG 1256, CCUG 1427, CECT 317, CIP 63.27, CNCTC Ps170/79, HNCMB 173005, IAM 1513, IMET 10409, JCM 2788, LMG 2088, LMG 2089, NCIB 9393, NCTC 8545, NRRL B-1496, USCC 1337, VKM B-893, AJ 2067, Hugh 342

[Ref.: #20218]

Associated Passport(s) in StrainInfo

122341, 43143, 43144, 43145, 43146, 43147, 43148, 43149, 43150, 43151, 230053, 43153, 43154, 43156, 43157, 43158, 43160, 43161, 43163, 43164, 43165, 43167, 122343

References

#3069

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7234

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41997 ; Curators of the CIP;
#65600 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 1427

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These References are textmined

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Brevundimonas diminuta in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF