Brevundimonas diminuta DSM 1635 is an obligate aerobe, Gram-negative, rod-shaped bacterium that has multiple antibiotic resistances and was isolated from Contaminant.
antibiotic resistance Gram-negative rod-shaped obligate aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Alphaproteobacteria |
| Order Caulobacterales |
| Family Caulobacteraceae |
| Genus Brevundimonas |
| Species Brevundimonas diminuta |
| Full scientific name Brevundimonas diminuta (Leifson and Hugh 1954) Segers et al. 1994 |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 839 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | ||
| 42085 | MEDIUM 29- Brain heart agar | Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g) | |||
| 118937 | CIP Medium 29 | Medium recipe at CIP |
| Test 1 | |
|---|---|
| @ref | 839 |
| Medium | Mueller-Hinton Agar |
| Manual annotation | 1 |
| Inhibition zone diameter in mm | |
| Amikacin 30µg (disc) | 22 |
| Ampicillin 10µg (disc) | 0 |
| Aztreonam 30µg (disc) | 0 |
| Bacitracin 10Unit | 18 |
| Cefalotin 30µg (disc) | 14 |
| Cefazolin 30µg (disc) | 0 |
| Cefotaxime 30µg (disc) | 30 |
| Ceftriaxone 30µg (disc) | 26-28 |
| Chloramphenicol 30µg (disc) | 38-40 |
| Clindamycin 10µg (disc) | 10 |
| Colistin 10µg (disc) | 0 |
| Doxycycline 30µg (disc) | 46 |
| Erythromycin 15µg (disc) | 18 |
| Fosfomycin 50µg (disc) | 30 |
| Gentamicin 10µg (disc) | 20 |
| Imipenem 10µg (disc) | 32 |
| Kanamycin 30µg (disc) | 40-42 |
| Lincomycin 15µg (disc) | 0 |
| Linezolid 10µg (disc) | 26-28 |
| Mezlocillin 30µg (disc) | 30 |
| Moxifloxacin 5µg (disc) | 16-18 |
| Neomycin 30µg (disc) | 22 |
| Nitrofurantoin 100µg (disc) | 0 |
| Norfloxacin 10µg (disc) | 0 |
| Nystatin 100Unit | 0 |
| Ofloxacin 5µg (disc) | 12 |
| Oxacillin 5µg (disc) | 0 |
| Penicillin G 6µg (disc) | 0 |
| Pipemidic acid 20µg (disc) | 0 |
| Piperacillin/Tazobactam 40µg (disc) | 34 |
| Polymyxin B 300Unit | 10 |
| Quinupristin/Dalfopristin 15µg (disc) | 0 |
| Teicoplanin 30µg (disc) | 0 |
| Tetracycline 30µg (disc) | 40 |
| Ticarcillin 75µg (disc) | 30 |
| Vancomycin 30µg (disc) | 12 |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 99.004 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | - | assimilation | from API 20NE |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68369 | 16899 ChEBI | D-mannitol | - | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 68369 | 27689 ChEBI | decanoate | - | assimilation | from API 20NE |
| 68369 | 4853 ChEBI | esculin | - | hydrolysis | from API 20NE |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 68369 | 24265 ChEBI | gluconate | - | assimilation | from API 20NE |
| 68369 | 30849 ChEBI | L-arabinose | - | assimilation | from API 20NE |
| 68369 | 25115 ChEBI | malate | - | assimilation | from API 20NE |
| 68369 | 17306 ChEBI | maltose | - | assimilation | from API 20NE |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 118937 | 17632 ChEBI | nitrate | - | reduction | |
| 118937 | 17632 ChEBI | nitrate | - | respiration | |
| 68369 | 17632 ChEBI | nitrate | - | reduction | from API 20NE |
| 118937 | 16301 ChEBI | nitrite | - | reduction | |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68369 | 16199 ChEBI | urea | - | hydrolysis | from API 20NE |
| @ref | ChEBI | Metabolite | Is resistant | Resistance conc. | |
|---|---|---|---|---|---|
| 839 | 28971 | Ampicillin | 10 µg (disc) | from Antibiotic test | |
| 839 | 161680 | Aztreonam | 30 µg (disc) | from Antibiotic test | |
| 839 | 474053 | Cefazolin | 30 µg (disc) | from Antibiotic test | |
| 839 | 37943 | Colistin | 10 µg (disc) | from Antibiotic test | |
| 839 | 6472 | Lincomycin | 15 µg (disc) | from Antibiotic test | |
| 839 | 71415 | Nitrofurantoin | 100 µg (disc) | from Antibiotic test | |
| 839 | 100246 | Norfloxacin | 10 µg (disc) | from Antibiotic test | |
| 839 | 7660 | Nystatin | 100 Unit | from Antibiotic test | |
| 839 | 7809 | Oxacillin | 5 µg (disc) | from Antibiotic test | |
| 839 | 18208 | Penicillin G | 6 µg (disc) | from Antibiotic test | |
| 839 | 75250 | Pipemidic acid | 20 µg (disc) | from Antibiotic test | |
| 839 | Quinupristin/Dalfopristin | 15 µg (disc) | from Antibiotic test | ||
| 839 | 29687 | Teicoplanin | 30 µg (disc) | from Antibiotic test |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 118937 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | + | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 118937 | amylase | - | ||
| 68369 | arginine dihydrolase | - | 3.5.3.6 | from API 20NE |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 118937 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68369 | beta-glucosidase | - | 3.2.1.21 | from API 20NE |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 118937 | caseinase | - | 3.4.21.50 | |
| 118937 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68369 | cytochrome oxidase | + | 1.9.3.1 | from API 20NE |
| 118937 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 118937 | gelatinase | - | ||
| 68369 | gelatinase | - | from API 20NE | |
| 118937 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 118937 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 118937 | ornithine decarboxylase | - | 4.1.1.17 | |
| 118937 | oxidase | + | ||
| 118937 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 118937 | tryptophan deaminase | - | ||
| 118937 | tween esterase | - | ||
| 118937 | urease | - | 3.5.1.5 | |
| 68369 | urease | - | 3.5.1.5 | from API 20NE |
| 68382 | valine arylamidase | - | from API zym |
| Metadata FA analysis | |||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | ||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | ||||||||||||||||||||||||||||||||||||
| @ref | 48015 | ||||||||||||||||||||||||||||||||||||
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Global distribution of 16S sequence LC383926 (>99% sequence identity) for Brevundimonas diminuta from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM410292v1 assembly for Brevundimonas diminuta ATCC(B) 19146 | complete | 293 | 97.53 | ||||
| 67770 | ASM653948v1 assembly for Brevundimonas diminuta NBRC 14213 | contig | 293 | 62.48 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Brevundimonas diminuta strain ATCC 19146 16S ribosomal RNA gene, partial sequence | DQ650706 | 434 | 293 | ||
| 20218 | Brevundimonas diminuta strain ATCC 19146 16S ribosomal RNA gene, partial sequence | EU497053 | 1339 | 293 | ||
| 20218 | B.diminuta 16S rRNA gene | X87274 | 1456 | 293 | ||
| 67770 | Brevundimonas diminuta JCM 2428 gene for 16S ribosomal RNA, partial sequence | LC383926 | 1385 | 293 | ||
| 124043 | Brevundimonas diminuta gene for 16S rRNA, partial sequence, strain: NBRC 14213. | AB680592 | 1388 | 293 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 98.73 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 97.05 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 62.71 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.00 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 97.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 85.91 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 89.32 | no |
| 125438 | aerobic | aerobicⓘ | yes | 85.06 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 97.50 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 59.43 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| First isolation of two colistin-resistant emerging pathogens, Brevundimonas diminuta and Ochrobactrum anthropi, in a woman with cystic fibrosis: a case report. | Menuet M, Bittar F, Stremler N, Dubus JC, Sarles J, Raoult D, Rolain JM. | J Med Case Rep | 10.1186/1752-1947-2-373 | 2008 | ||
| Phylogeny | Long-term population dynamics of phototrophic sulfur bacteria in the chemocline of Lake Cadagno, Switzerland. | Tonolla M, Peduzzi R, Hahn D. | Appl Environ Microbiol | 10.1128/aem.71.7.3544-3550.2005 | 2005 | |
| Metabolism | Improved sensitivity of whole-cell hybridization by the combination of horseradish peroxidase-labeled oligonucleotides and tyramide signal amplification. | Schonhuber W, Fuchs B, Juretschko S, Amann R. | Appl Environ Microbiol | 10.1128/aem.63.8.3268-3273.1997 | 1997 | |
| A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations. | Huang YJ, Kim E, Cox MJ, Brodie EL, Brown R, Wiener-Kronish JP, Lynch SV. | OMICS | 10.1089/omi.2009.0100 | 2010 | ||
| Metabolism | Bacterial community dynamics during start-up of a trickle-bed bioreactor degrading aromatic compounds. | Stoffels M, Amann R, Ludwig W, Hekmat D, Schleifer KH. | Appl Environ Microbiol | 10.1128/aem.64.3.930-939.1998 | 1998 | |
| Metabolism | Population analysis in a denitrifying sand filter: conventional and in situ identification of Paracoccus spp. in methanol-fed biofilms. | Neef A, Zaglauer A, Meier H, Amann R, Lemmer H, Schleifer KH. | Appl Environ Microbiol | 10.1128/aem.62.12.4329-4339.1996 | 1996 | |
| Enzymology | The abundance of Zoogloea ramigera in sewage treatment plants. | Rossello-Mora RA, Wagner M, Amann R, Schleifer KH. | Appl Environ Microbiol | 10.1128/aem.61.2.702-707.1995 | 1995 | |
| Phylogeny | Flow sorting of microorganisms for molecular analysis. | Wallner G, Fuchs B, Spring S, Beisker W, Amann R. | Appl Environ Microbiol | 10.1128/aem.63.11.4223-4231.1997 | 1997 | |
| Metabolism | Microscopic Characterization of Brevundimonas diminuta in the Hydrated State. | Harp G, Cho SJ, Lester E, Rose D, Sabanyagam C, Ross SF. | PDA J Pharm Sci Technol | 10.5731/pdajpst.2015.01045 | 2015 | |
| Comparative Evaluation of the Performance of Sterile Filters for Bioburden Protection and Final Fill in Biopharmaceutical Processes. | Na J, Suh D, Cho YH, Baek Y. | Membranes (Basel) | 10.3390/membranes12050524 | 2022 | ||
| Enzymology | First report of an extensively drug-resistant VIM-2 metallo-beta-lactamase-producing Brevundimonas diminuta clinical isolate. | Almuzara MN, Barberis CM, Rodriguez CH, Famiglietti AM, Ramirez MS, Vay CA. | J Clin Microbiol | 10.1128/jcm.00924-12 | 2012 | |
| Fluorescence-based rapid detection of microbiological contaminants in water samples. | Meder H, Baumstummler A, Chollet R, Barrier S, Kukuczka M, Olivieri F, Welterlin E, Beguin V, Ribault S. | ScientificWorldJournal | 10.1100/2012/234858 | 2012 | ||
| Rapid methods for testing the efficacy of sterilization-grade filter membranes. | Griffiths MH, Andrew PW, Ball PR, Hall GM. | Appl Environ Microbiol | 10.1128/aem.66.8.3432-3437.2000 | 2000 | ||
| Packaging Considerations for Biopreservation. | Woods EJ, Thirumala S. | Transfus Med Hemother | 10.1159/000326083 | 2011 | ||
| Use of Hydrogenophaga pseudoflava penetration to quantitatively assess the impact of filtration parameters for 0.2-micrometer-pore-size filters. | Lee A, McVey J, Faustino P, Lute S, Sweeney N, Pawar V, Khan M, Brorson K, Hussong D. | Appl Environ Microbiol | 10.1128/aem.01825-09 | 2010 | ||
| Metabolism | Determination of DNA content of aquatic bacteria by flow cytometry. | Button DK, Robertson BR. | Appl Environ Microbiol | 10.1128/aem.67.4.1636-1645.2001 | 2001 | |
| Bacterial and fungal bioburden reduction on material surfaces using various sterilization techniques suitable for spacecraft decontamination. | Kimura S, Ishikawa S, Hayashi N, Fujita K, Inatomi Y, Suzuki S. | Front Microbiol | 10.3389/fmicb.2023.1253436 | 2023 | ||
| Enzymology | Experimental comparison of point-of-use filters for drinking water ultrafiltration. | Totaro M, Valentini P, Casini B, Miccoli M, Costa AL, Baggiani A | J Hosp Infect | 10.1016/j.jhin.2016.11.017 | 2016 | |
| The Importance of Accurate Microorganism Identification in Microbial Challenge Tests of Membrane Filters. Part II. The Comparison of Hydrogenophaga pseudoflava ATTC 33668 and Curvibacter sp. ATCC 700892 by Microbial Challenge Tests with Membrane Filters. | Haake G, Kaesler-Neumann I, Hennig H, Meltzer TH, Jornitz MW | PDA J Pharm Sci Technol | 10.5731/pdajpst.2012.00876 | 2012 | ||
| The importance of accurate microorganism identification in microbial challenge tests of membrane filters--part I. | Kaesler I, Haake G, Hennig H, Rosenhagen A, Meltzer TH, Jornitz MW | PDA J Pharm Sci Technol | 65/2/92 | 2011 | ||
| Enzymology | Quantitative real-time PCR and fluorescence in situ hybridization approaches for enumerating Brevundimonas diminuta in drinking water. | Donofrio RS, Bestervelt LL, Saha R, Bagley ST | J Ind Microbiol Biotechnol | 10.1007/s10295-010-0738-1 | 2010 | |
| Cultivation | Changes in the cell size of Brevundimonas diminuta using different growth agitation rates. | Lee SH, Lee SS, Kim CW | PDA J Pharm Sci Technol | 2002 | ||
| Cultivation | Method for qualifying microbial removal performance of 0.1 micron rated filters. Part III: bacterial challenge tests on 0.2/0.22 and 0.1 micron rated filter cartridges with Hydrogenophaga (formerly Pseudomonas) pseudoflava. | Sundaram S, Eisenhuth J, Lewis M, Howard G Jr, Brandwein H | PDA J Pharm Sci Technol | 2001 | ||
| Enzymology | Evaluation of recovery filters for use in bacterial retention testing of sterilizing-grade filters. | Carter J | PDA J Pharm Sci Technol | 1996 | ||
| Microbial retention characteristics of 0.2-microns-rated nylon membrane filters during filtration of high viscosity fluids at high differential pressure and varied temperatures. | Aranha H, Meeker J | PDA J Pharm Sci Technol | 1995 | |||
| Enzymology | [RoTrac capillary pore membranes for laboratory filtration. II. Bacteria-free filtration]. | Gemende B, Heinrich B, Selassie GG, Knaack D, Witzleb W | Zentralbl Hyg Umweltmed | 1992 |
| #839 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1635 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20216 | Curators of the JMRC: Jena Microbial Resource Collection (JMRC): |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #42085 | ; Curators of the CIP; |
| #48015 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 24715 |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68369 | Automatically annotated from API 20NE . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #118937 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103020 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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