Alkalibacterium gilvum (DSM 25760, 5BE-1)

Name: Alkalibacterium gilvum (DSM 25760, 5BE-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 22954

Type strain

Strain Designation 5BE-1

Culture col. no. DSM 25760 5BE-1

NCBI tax ID(s) 1130080

Special Collections DSMZ

History DSMZ <- M. Ishikawa, Tokyo Univ. Agriculture, Japan; 5BE-1

Links

Alkalibacterium gilvum 5BE-1 is a microaerophile bacterium that was isolated from cheese .

microaerophile 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405623

DSM 25760

@ref 20215

Last LPSN update 2026-05-29 08:30:20

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Carnobacteriaceae

Genus Alkalibacterium

Species Alkalibacterium gilvum

Full scientific name Alkalibacterium gilvum Ishikawa et al. 2013

BacDive ID	Other strains from **Alkalibacterium gilvum** (8)	Type strain
22946	A. gilvum 3AD-1, DSM 25751, JCM 18271 (type strain)
22947	A. gilvum 4BE-1, DSM 25752
22948	A. gilvum 1AD-2, DSM 25753
22949	A. gilvum 5AE-1, DSM 25754
22950	A. gilvum 15BE-3, DSM 25755
22951	A. gilvum 3AE-1, DSM 25757
22952	A. gilvum 4AD-1, DSM 25758
22953	A. gilvum 5AD-1, DSM 25759

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19289	BOGORIELLA MEDIUM (DSMZ Medium 785)		Medium recipe at MediaDive	Name: BOGORIELLA MEDIUM (DSMZ Medium 785) Composition: NaCl 40.0 g/l Glucose 10.0 g/l Na2CO3 10.0 g/l Yeast extract 5.0 g/l Peptone 5.0 g/l KH2PO4 1.0 g/l MgSO4 x 7 H2O 0.2 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
19289	positive	growth	30

Physiology and metabolism

Oxygen tolerance

19289

Oxygen tolerancemicroaerophile

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	acetate fermentation	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	ribulose monophosphate pathway	100	2 of 2
66794	pentose phosphate pathway	100	11 of 11
66794	palmitate biosynthesis	100	22 of 22
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	glycine betaine biosynthesis	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	serine metabolism	77.78	7 of 9
66794	glycogen biosynthesis	75	3 of 4
66794	NAD metabolism	72.22	13 of 18
66794	photosynthesis	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	starch degradation	70	7 of 10
66794	vitamin B1 metabolism	69.23	9 of 13
66794	phenylalanine metabolism	69.23	9 of 13
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	formaldehyde oxidation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	purine metabolism	65.96	62 of 94
66794	glycolysis	64.71	11 of 17
66794	ketogluconate metabolism	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	isoleucine metabolism	62.5	5 of 8
66794	pyrimidine metabolism	62.22	28 of 45
66794	lipoate biosynthesis	60	3 of 5
66794	non-pathway related	57.89	22 of 38
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	propanol degradation	57.14	4 of 7
66794	degradation of sugar alcohols	56.25	9 of 16
66794	d-mannose degradation	55.56	5 of 9
66794	valine metabolism	55.56	5 of 9
66794	proline metabolism	54.55	6 of 11
66794	urea cycle	53.85	7 of 13
66794	oxidative phosphorylation	51.65	47 of 91
66794	cyclohexanol degradation	50	2 of 4
66794	butanoate fermentation	50	2 of 4
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	sulfopterin metabolism	50	2 of 4
66794	myo-inositol biosynthesis	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	tetrahydrofolate metabolism	50	7 of 14
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	phenylmercury acetate degradation	50	1 of 2
66794	adipate degradation	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	glutamate and glutamine metabolism	46.43	13 of 28
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	metabolism of disaccharids	45.45	5 of 11
66794	d-xylose degradation	45.45	5 of 11
66794	alanine metabolism	44.83	13 of 29
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	mevalonate metabolism	42.86	3 of 7
66794	degradation of pentoses	42.86	12 of 28
66794	glutathione metabolism	42.86	6 of 14
66794	tryptophan metabolism	42.11	16 of 38
66794	arachidonate biosynthesis	40	2 of 5
66794	threonine metabolism	40	4 of 10
66794	Entner Doudoroff pathway	40	4 of 10
66794	gallate degradation	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	cellulose degradation	40	2 of 5
66794	propionate fermentation	40	4 of 10
66794	lipid metabolism	38.71	12 of 31
66794	lysine metabolism	38.1	16 of 42
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	37.5	3 of 8
66794	gluconeogenesis	37.5	3 of 8
66794	C4 and CAM-carbon fixation	37.5	3 of 8
66794	vitamin B6 metabolism	36.36	4 of 11
66794	ascorbate metabolism	36.36	8 of 22
66794	methionine metabolism	34.62	9 of 26
66794	histidine metabolism	34.48	10 of 29
66794	octane oxidation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	allantoin degradation	33.33	3 of 9
66794	cyanate degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	leucine metabolism	30.77	4 of 13
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	degradation of hexoses	27.78	5 of 18
66794	cysteine metabolism	27.78	5 of 18
66794	flavin biosynthesis	26.67	4 of 15
66794	toluene degradation	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	arginine metabolism	25	6 of 24
66794	sulfate reduction	23.08	3 of 13
66794	chorismate metabolism	22.22	2 of 9
66794	arachidonic acid metabolism	22.22	4 of 18
66794	molybdenum cofactor biosynthesis	22.22	2 of 9
66794	nitrate assimilation	22.22	2 of 9
66794	tyrosine metabolism	21.43	3 of 14
66794	citric acid cycle	21.43	3 of 14

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Dairy product

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
19289	cheese (Brie)	France	FRA	Europe

Taxonmaps

69479

Global distribution of 16S sequence AB690573 (>99% sequence identity) for Alkalibacterium gilvum from Microbeatlas

Aquatic Samples	233
Soil Samples	74
Animal Samples	684
Plant Samples	38
Total Samples	1029

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19289	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19289	Alkalibacterium gilvum gene for 16S rRNA, partial sequence, strain: 5BE-1	AB690573	1501		1130080

Genome-based predictions

Literature

References

#19289	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25760
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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