Name: Trichococcus flocculiformis Echt
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2281

Type strain:

Species: Trichococcus flocculiformis

Strain Designation: Echt

Culture col. no.: DSM 2094, ATCC 51221

Strain history: <- G. Scheff and F. Lingens, strain Echt <- O. Salcher

NCBI tax ID(s): 82803 (species)

SI-ID 42865

ATCC 51221, DSM 2094

Other strains from Trichococcus flocculiformis

T. flocculiformis ES5, DSM 23957

Section

Trichococcus flocculiformis Echt is a bacterium that was isolated from sewage sludge, sewage plant.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Carnobacteriaceae*
	Genus	*Trichococcus*
	Species	**Trichococcus flocculiformis**
	Full Scientific Name (LPSN)	Trichococcus flocculiformis Scheff et al. 1984

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.117

Information on culture and growth conditions Culture and growth conditions

[Ref.: #718]

Culture medium

TRICHOCOCCUS MEDIUM (DSMZ Medium 183)

[Ref.: #718]

Culture medium growth

[Ref.: #718]

Culture medium link

Medium recipe at MediaDive

[Ref.: #718]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #718]			growth	20-30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.839

[Ref.: #718]	Murein short key	A11.31
[Ref.: #718]	Murein types	A4alpha L-Lys-D-Asp

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #718]	Sample type/isolated from	sewage sludge, sewage plant
[Ref.: #718]	Geographic location (country and/or sea, region)	Echterdingen
[Ref.: #718]	Country	Germany
[Ref.: #718]	Country ISO 3 Code	DEU
[Ref.: #718]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Plant (Factory)
#Engineered	#Waste	#Sewage sludge

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y17301 (>99% sequence identity) for Trichococcus from Microbeatlas

Aquatic Samples	19650
Soil Samples	4890
Animal Samples	13208
Plant Samples	929
Total Samples	38677

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #718]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #718]	Trichococcus flocculiformis 16S rRNA gene	Y17301	1550	ENA	82803 tax ID
[Ref.: #20218]	Trichococcus flocculiformis 16S rRNA gene, strain DSM 2094	AJ306611	1438	ENA	82803 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Trichococcus flocculiformis DSM 2094	GCA_900113645	scaffold	GenBank	82803 tax ID	*
[Ref.: #66792]	Trichococcus flocculiformis strain DSM 2094	82803.9	wgs	PATRIC	82803 tax ID	*
[Ref.: #66792]	Trichococcus flocculiformis DSM 2094	2619618836	draft	JGI IMG/M	82803 tax ID	*

[Ref.: #718]

GC-content

46.8 mol%

Buoyant density centrifugation (BD)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Trichococcus flocculiformis DSM 2094 NCBI: GCA_900113645.1
[Ref.: #69481]	spore-forming	yes	52	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Trichococcus flocculiformis DSM 2094 NCBI: GCA_900113645.1
[Ref.: #69480]	motile	no	94.042	no
[Ref.: #69480]	flagellated	no	93.041	no
[Ref.: #69480]	gram-positive	yes	91.77	no
[Ref.: #69480]	anaerobic	no	78.591	no
[Ref.: #69480]	aerobic	no	92.269	no
[Ref.: #69480]	halophile	yes	66.519	no
[Ref.: #69480]	spore-forming	no	87.879	no
[Ref.: #69480]	glucose-ferment	yes	77.94	no
[Ref.: #69480]	thermophile	no	99.607	no
[Ref.: #69480]	glucose-util	yes	89.446	no

Availability in culture collections External links

[Ref.: #718]

Culture collection no.

DSM 2094, ATCC 51221

[Ref.: #71839]

SI-ID 42865

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species.	Strepis N, Naranjo HD, Meier-Kolthoff J, Goker M, Shapiro N, Kyrpides N, Klenk HP, Schaap PJ, Stams AJM, Sousa DZ	BMC Genomics	10.1186/s12864-019-6410-x	2020	*
Phylogeny	Emended description of the genus Trichococcus, description of Trichococcus collinsii sp. nov., and reclassification of Lactosphaera pasteurii as Trichococcus pasteurii comb. nov. and of Ruminococcus palustris as Trichococcus palustris comb. nov. in the low-G+C gram-positive bacteria.	Liu JR, Tanner RS, Schumann P, Weiss N, McKenzie CA, Janssen PH, Seviour EM, Lawson PA, Allen TD, Seviour RJ	Int J Syst Evol Microbiol	10.1099/00207713-52-4-1113	2002	*

References

#718	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2094

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71839

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42865.1 )

* These data were automatically processed and therefore are not curated

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Trichococcus flocculiformis DSM 2094

Trichococcus flocculiformis DSM 2094

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