Name: Alkalibacterium putridalgicola T129-2-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2245

Type strain:

Species: Alkalibacterium putridalgicola

Strain Designation: T129-2-1

Culture col. no.: DSM 19182, NBRC 103243, NRIC 0720

Strain history: <- M. Ishikawa and K. Yamamoto, Faculty of Applied Bio-Science, Tokyo University of Agriculture, Setagaya-ku, Japan; T129-2-1

NCBI tax ID(s): 426703 (species)

SI-ID 404198

DSM 19182

Section

Alkalibacterium putridalgicola T129-2-1 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from decaying marine alga.

Gram-positive
motile
rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Carnobacteriaceae*
	Genus	*Alkalibacterium*
	Species	**Alkalibacterium putridalgicola**
	Full Scientific Name (LPSN)	Alkalibacterium putridalgicola Ishikawa et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #32511]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #32511]	Cell length	5.35 µm

[Ref.: #32511]	Cell width	0.75 µm

[Ref.: #32511]	Cell shape	rod-shaped

[Ref.: #32511]	Motility	yes

[Ref.: #32511]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7954]

Culture medium

BOGORIELLA MEDIUM (DSMZ Medium 785)

[Ref.: #7954]

Culture medium growth

[Ref.: #7954]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7954]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7954]			growth	28 °C
[Ref.: #32511]			optimum	38.5 °C

[Ref.: #7954]	Temperature range	mesophilic
[Ref.: #32511]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32511]			optimum	8.5
[Ref.: #32511]			growth	6.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7954]	Oxygen tolerance	microaerophile
[Ref.: #32511]	Oxygen tolerance	aerobe

[Ref.: #32511]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.927

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32511]		NaCl		growth	0-20	%
[Ref.: #32511]		NaCl		optimum	3	%

[Ref.: #7954]	Murein short key	A21.04
[Ref.: #7954]	Murein types	A4ß L-Orn-D-Asp

[Ref.: #32511]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32511]	acetate ChEBI	+	carbon source
[Ref.: #32511]	arabinose ChEBI	+	carbon source
[Ref.: #32511]	cellobiose ChEBI	+	carbon source
[Ref.: #32511]	ethanol ChEBI	+	carbon source
[Ref.: #32511]	galactose ChEBI	+	carbon source
[Ref.: #32511]	glucose ChEBI	+	carbon source
[Ref.: #32511]	lactate ChEBI	+	carbon source
[Ref.: #32511]	lactose ChEBI	+	carbon source
[Ref.: #32511]	raffinose ChEBI	+	carbon source
[Ref.: #32511]	salicin ChEBI	+	carbon source
[Ref.: #32511]	sucrose ChEBI	+	carbon source
[Ref.: #32511]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7954]	Sample type/isolated from	decaying marine alga
[Ref.: #7954]	Geographic location (country and/or sea, region)	Rayong province, seashore of Ko Samet, Samet Island
[Ref.: #7954]	Country	Thailand
[Ref.: #7954]	Country ISO 3 Code	THA
[Ref.: #7954]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Algae	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB294167 (>99% sequence identity) for Alkalibacterium from Microbeatlas

Aquatic Samples	167
Soil Samples	21
Animal Samples	226
Plant Samples	2
Total Samples	416

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7954]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7954]	Alkalibacterium putridalgicola gene for 16S rRNA, partial sequence, strain: T129-2-1	AB294167	1478	ENA	426703 tax ID
[Ref.: #20218]	Alkalibacterium putridalgicola gene for 16S rRNA, partial sequence, strain: NBRC 103243	AB681987	1479	ENA	426703 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alkalibacterium putridalgicola NBRC 103243	GCA_007988845	contig	GenBank	426703 tax ID	*
[Ref.: #66792]	Alkalibacterium putridalgicola DSM 19182	GCA_900109825	contig	GenBank	426703 tax ID	*
[Ref.: #66792]	Alkalibacterium putridalgicola strain DSM 19182	426703.4	wgs	PATRIC	426703 tax ID	*
[Ref.: #66792]	Alkalibacterium putridalgicola strain NBRC 103243	426703.5	wgs	PATRIC	426703 tax ID	*
[Ref.: #66792]	Alkalibacterium putridalgicola DSM 19182	2619619007	draft	JGI IMG/M	426703 tax ID	*

[Ref.: #7954]

GC-content

42.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alkalibacterium putridalgicola strain NBRC 103243 PATRIC: 426703.5
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alkalibacterium putridalgicola strain DSM 19182 PATRIC: 426703.4
[Ref.: #69480]	gram-positive	yes	91.055	yes
[Ref.: #69480]	anaerobic	no	95.338	yes
[Ref.: #69480]	halophile	yes	88.99	no
[Ref.: #69480]	spore-forming	no	82.205	yes
[Ref.: #69480]	glucose-util	yes	91.972	yes
[Ref.: #69480]	aerobic	no	86.684	no
[Ref.: #69480]	thermophile	no	98.133	no
[Ref.: #69480]	motile	yes	71.351	yes
[Ref.: #69480]	flagellated	no	83.57	no
[Ref.: #69480]	glucose-ferment	yes	75.678	no

Availability in culture collections External links

[Ref.: #7954]

Culture collection no.

DSM 19182, NBRC 103243, NRIC 0720

[Ref.: #71804]

SI-ID 404198

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alkalibacterium subtropicum sp. nov., a slightly halophilic and alkaliphilic marine lactic acid bacterium isolated from decaying marine algae.	Ishikawa M, Nakajima K, Ishizaki S, Kodama K, Okamoto-Kainuma A, Koizumi Y, Yamamoto Y, Yamasato K	Int J Syst Evol Microbiol	10.1099/ijs.0.027953-0	2011	*
Phylogeny	Alkalibacterium thalassium sp. nov., Alkalibacterium pelagium sp. nov., Alkalibacterium putridalgicola sp. nov. and Alkalibacterium kapii sp. nov., slightly halophilic and alkaliphilic marine lactic acid bacteria isolated from marine organisms and salted foods collected in Japan and Thailand.	Ishikawa M, Tanasupawat S, Nakajima K, Kanamori H, Ishizaki S, Kodama K, Okamoto-Kainuma A, Koizumi Y, Yamamoto Y, Yamasato K	Int J Syst Evol Microbiol	10.1099/ijs.0.65602-0	2009	*

References

#7954

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19182

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32511

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28731 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71804

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404198.1 )

#28731

IJSEM 1215 2009 ( DOI 10.1099/ijs.0.65602-0 , PubMed 19406822 )

* These data were automatically processed and therefore are not curated

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Alkalibacterium putridalgicola strain NBRC 103243

Alkalibacterium putridalgicola strain DSM 19182

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