Name: Alkalibacterium thalassium T117-1-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2244

Type strain:

Species: Alkalibacterium thalassium

Strain Designation: T117-1-2

Culture col. no.: DSM 19181, NBRC 103241, NRIC 0718

Strain history: <- M. Ishikawa and K. Yamasato, Faculty of Applied Bio-Science, Tokyo University of Agriculture, Setagaya-ku, Japan; T117-1-2

NCBI tax ID(s): 426701 (species)

SI-ID 407577

DSM 19181

Section

Alkalibacterium thalassium T117-1-2 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from decaying marine alga.

Gram-positive
rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Carnobacteriaceae*
	Genus	*Alkalibacterium*
	Species	**Alkalibacterium thalassium**
	Full Scientific Name (LPSN)	Alkalibacterium thalassium Ishikawa et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #32511]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #32511]	Cell length	6.3 µm

[Ref.: #32511]	Cell width	1 µm

[Ref.: #32511]	Cell shape	rod-shaped

[Ref.: #32511]	Motility	no

[Ref.: #32511]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7953]

Culture medium

BOGORIELLA MEDIUM (DSMZ Medium 785)

[Ref.: #7953]

Culture medium growth

[Ref.: #7953]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7953]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7953]	growth	28 °C
[Ref.: #32511]	growth	10-42.5 °C
[Ref.: #32511]	optimum	37 °C

[Ref.: #7953]	Temperature range	mesophilic
[Ref.: #32511]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32511]			optimum	9
[Ref.: #32511]			growth	07-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7953]	Oxygen tolerance	microaerophile
[Ref.: #32511]	Oxygen tolerance	aerobe

[Ref.: #32511]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.834

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32511]		NaCl		growth	0-11	%
[Ref.: #32511]		NaCl		optimum	1.75	%

[Ref.: #7953]	Murein short key	A21.04
[Ref.: #7953]	Murein types	A4ß L-Orn-D-Asp

[Ref.: #32511]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32511]	acetate ChEBI	+	carbon source
[Ref.: #32511]	cellobiose ChEBI	+	carbon source
[Ref.: #32511]	ethanol ChEBI	+	carbon source
[Ref.: #32511]	galactose ChEBI	+	carbon source
[Ref.: #32511]	glucose ChEBI	+	carbon source
[Ref.: #32511]	lactate ChEBI	+	carbon source
[Ref.: #32511]	lactose ChEBI	+	carbon source
[Ref.: #32511]	raffinose ChEBI	+	carbon source
[Ref.: #32511]	salicin ChEBI	+	carbon source
[Ref.: #32511]	sucrose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7953]	Sample type/isolated from	decaying marine alga
[Ref.: #7953]	Geographic location (country and/or sea, region)	Rayong province, seashore of Ko Samet, Samet Island
[Ref.: #7953]	Country	Thailand
[Ref.: #7953]	Country ISO 3 Code	THA
[Ref.: #7953]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Algae	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB294165 (>99% sequence identity) for Alkalibacterium from Microbeatlas

Aquatic Samples	81
Soil Samples	4
Animal Samples	78
Plant Samples	8
Total Samples	171

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7953]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7953]	Alkalibacterium thalassium gene for 16S rRNA, partial sequence, strain: T117-1-2	AB294165	1487	ENA	426701 tax ID
[Ref.: #20218]	Alkalibacterium thalassium gene for 16S rRNA, partial sequence, strain: NBRC 103241	AB681985	1478	ENA	426701 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alkalibacterium thalassium DSM 19181	GCA_900101165	scaffold	GenBank	426701 tax ID	*
[Ref.: #66792]	Alkalibacterium thalassium strain DSM 19181	426701.4	wgs	PATRIC	426701 tax ID	*
[Ref.: #66792]	Alkalibacterium thalassium DSM 19181	2619619006	draft	JGI IMG/M	426701 tax ID	*

[Ref.: #7953]

GC-content

41.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alkalibacterium thalassium DSM 19181 NCBI: GCA_900101165.1
[Ref.: #69481]	spore-forming	no	83	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alkalibacterium thalassium DSM 19181 NCBI: GCA_900101165.1
[Ref.: #69480]	flagellated	no	96.464	no
[Ref.: #69480]	gram-positive	yes	93.627	yes
[Ref.: #69480]	anaerobic	no	95.101	yes
[Ref.: #69480]	aerobic	no	84.563	no
[Ref.: #69480]	halophile	yes	92.722	no
[Ref.: #69480]	spore-forming	no	92.157	no
[Ref.: #69480]	glucose-ferment	yes	73.028	no
[Ref.: #69480]	thermophile	no	99.453	yes
[Ref.: #69480]	glucose-util	yes	91.273	yes
[Ref.: #69480]	motile	no	93.053	yes

Availability in culture collections External links

[Ref.: #7953]

Culture collection no.

DSM 19181, NBRC 103241, NRIC 0718

[Ref.: #71803]

SI-ID 407577

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alkalibacterium thalassium sp. nov., Alkalibacterium pelagium sp. nov., Alkalibacterium putridalgicola sp. nov. and Alkalibacterium kapii sp. nov., slightly halophilic and alkaliphilic marine lactic acid bacteria isolated from marine organisms and salted foods collected in Japan and Thailand.	Ishikawa M, Tanasupawat S, Nakajima K, Kanamori H, Ishizaki S, Kodama K, Okamoto-Kainuma A, Koizumi Y, Yamamoto Y, Yamasato K	Int J Syst Evol Microbiol	10.1099/ijs.0.65602-0	2009	*

References

#7953

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19181

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32511

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28731 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71803

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407577.1 )

#28731

IJSEM 1215 2009 ( DOI 10.1099/ijs.0.65602-0 , PubMed 19406822 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Alkalibacterium thalassium in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Alkalibacterium thalassium DSM 19181

Alkalibacterium thalassium DSM 19181

Change proposal

Change proposal