Name: Alkalibacterium olivapovliticum WW2-SN4a
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2242

Type strain:

Species: Alkalibacterium olivapovliticum

Strain Designation: WW2-SN4a

Culture col. no.: DSM 13175, NCIMB 13710, CIP 107107

Strain history: CIP <- 2001, N. J. Russell, Imperial College, Kent, UK: strain WW2-SN4A <- S. Ntougias

NCBI tax ID(s): 99907 (species)

Section

Alkalibacterium olivapovliticum WW2-SN4a is a mesophilic, Gram-positive bacterium that was isolated from the alkaline wash-waters of edible olives.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Carnobacteriaceae*
	Genus	*Alkalibacterium*
	Species	**Alkalibacterium olivapovliticum**
	Full Scientific Name (LPSN)	Alkalibacterium olivapovliticum corrig. Ntougias and Russell 2001

	Synonym	Alkalibacterium olivapovliticus
	Synonym	Alkalibacterium olivoapovliticus

Information on morphological and physiological properties Morphology

[Ref.: #121417]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #121417]	Cell shape	rod-shaped

[Ref.: #121417]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4959]

Culture medium

ALKALIBACTERIUM OLIVAPOVLITICUS (DSMZ Medium 923)

[Ref.: #4959]

Culture medium growth

[Ref.: #4959]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4959]

Culture medium composition

expand / minimize

[Ref.: #40676]

Culture medium

MEDIUM 381 - for Alkalibacterium

[Ref.: #40676]

Culture medium growth

[Ref.: #40676]

Culture medium composition

expand / minimize

[Ref.: #121417]

Culture medium

CIP Medium 381

[Ref.: #121417]

Culture medium growth

[Ref.: #121417]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #4959]		growth	25 °C
[Ref.: #40676]		growth	25 °C
[Ref.: #121417]		growth	10-37 °C
[Ref.: #121417]	no	growth	41 °C
[Ref.: #121417]	no	growth	45 °C

[Ref.: #4959]	Temperature range	mesophilic
[Ref.: #40676]	Temperature range	mesophilic
[Ref.: #121417]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.305

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #121417]		NaCl		growth	6.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #121417]	esculin ChEBI	-	hydrolysis
[Ref.: #121417]	hippurate ChEBI	+	hydrolysis
[Ref.: #121417]	nitrate ChEBI	-	reduction
[Ref.: #121417]	nitrite ChEBI	-	reduction

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #121417]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #121417]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121417]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121417]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #121417]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121417]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #121417]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121417]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #121417]	2004	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121417]	10070	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4959]	Sample type/isolated from	the alkaline wash-waters of edible olives
[Ref.: #4959]	Country	Greece
[Ref.: #4959]	Country ISO 3 Code	GRC
[Ref.: #4959]	Continent	Europe

[Ref.: #121417]	Sample type/isolated from	Environment, Edible-olive wash-waters
[Ref.: #121417]	Country	Greece
[Ref.: #121417]	Country ISO 3 Code	GRC
[Ref.: #121417]	Continent	Europe
[Ref.: #121417]	Isolation date	1996
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Wastewater
#Condition	#Alkaline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF143511 (>99% sequence identity) for Alkalibacterium from Microbeatlas

Aquatic Samples	158
Soil Samples	22
Animal Samples	436
Plant Samples	37
Total Samples	653

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4959]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121417]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4959]	Alkalibacterium olivoapovliticus strain WW2-SN4a 16S ribosomal RNA gene, partial sequence	AF143511	1507	ENA	99907 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alkalibacterium olivapovliticus DSM 13175	GCA_003003275	scaffold	GenBank	99907 tax ID	*
[Ref.: #66792]	Alkalibacterium olivapovliticus strain DSM 13175	99907.4	wgs	PATRIC	99907 tax ID	*
[Ref.: #66792]	Alkalibacterium olivapovliticus DSM 13175	2731639256	draft	JGI IMG/M	99907 tax ID	*

[Ref.: #4959]

GC-content

39.7±1.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alkalibacterium olivapovliticus DSM 13175 NCBI: GCA_003003275.1
[Ref.: #69481]	spore-forming	yes	66	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alkalibacterium olivapovliticus DSM 13175 NCBI: GCA_003003275.1
[Ref.: #69480]	flagellated	no	75.549	no
[Ref.: #69480]	gram-positive	yes	90.543	no
[Ref.: #69480]	anaerobic	no	92.475	no
[Ref.: #69480]	aerobic	no	86.621	no
[Ref.: #69480]	halophile	yes	85.143	no
[Ref.: #69480]	spore-forming	no	80.087	no
[Ref.: #69480]	glucose-util	yes	89.343	no
[Ref.: #69480]	thermophile	no	99.178	yes
[Ref.: #69480]	motile	yes	65.739	no
[Ref.: #69480]	glucose-ferment	yes	79.789	no

Availability in culture collections External links

[Ref.: #4959]

Culture collection no.

DSM 13175, NCIMB 13710, CIP 107107

References

#4959

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13175

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#40676 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#121417 Collection of Institut Pasteur ; Curators of the CIP; CIP 107107
* These data were automatically processed and therefore are not curated

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Alkalibacterium olivapovliticus DSM 13175

Alkalibacterium olivapovliticus DSM 13175

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Change proposal