Name: Alkalibacterium kapii T22-1-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2243

Type strain:

Species: Alkalibacterium kapii

Strain Designation: T22-1-2

Culture col. no.: DSM 19180, NBRC 103247, NRIC 0724

Strain history: <- M. Ishikawa and K. Yamasato, Faculty of Applied Bio-Science, Tokyo University of Agriculture, Setagaya-ku, Japan; T22-1-2

NCBI tax ID(s): 426704 (species)

SI-ID 406530

DSM 19180

Section

Alkalibacterium kapii T22-1-2 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from 'ka-pi, a salted and fermented shrimp paste.

Gram-positive
motile
rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Carnobacteriaceae*
	Genus	*Alkalibacterium*
	Species	**Alkalibacterium kapii**
	Full Scientific Name (LPSN)	Alkalibacterium kapii Ishikawa et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #32511]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #32511]	Cell length	2.7 µm

[Ref.: #32511]	Cell width	0.85 µm

[Ref.: #32511]	Cell shape	rod-shaped

[Ref.: #32511]	Motility	yes

[Ref.: #32511]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7952]

Culture medium

BOGORIELLA MEDIUM (DSMZ Medium 785)

[Ref.: #7952]

Culture medium growth

[Ref.: #7952]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7952]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7952]	growth	28 °C
[Ref.: #32511]	growth	5-42.5 °C
[Ref.: #32511]	optimum	31 °C

[Ref.: #7952]	Temperature range	mesophilic
[Ref.: #32511]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32511]			optimum	8.75
[Ref.: #32511]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7952]

Oxygen tolerance

microaerophile

[Ref.: #32511]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.962

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32511]		NaCl		growth	0-21	%
[Ref.: #32511]		NaCl		optimum	2	%

[Ref.: #7952]	Murein short key	A21.05
[Ref.: #7952]	Murein types	A4ß L-Orn-D-Glu

[Ref.: #32511]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32511]	acetate ChEBI	+	carbon source
[Ref.: #32511]	ethanol ChEBI	+	carbon source
[Ref.: #32511]	glucose ChEBI	+	carbon source
[Ref.: #32511]	lactate ChEBI	+	carbon source
[Ref.: #32511]	sorbitol ChEBI	+	carbon source
[Ref.: #32511]	sucrose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7952]	Sample type/isolated from	'ka-pi, a salted and fermented shrimp paste
[Ref.: #7952]	Geographic location (country and/or sea, region)	near Bangkok
[Ref.: #7952]	Country	Thailand
[Ref.: #7952]	Country ISO 3 Code	THA
[Ref.: #7952]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Geologic

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7952]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7952]	Alkalibacterium kapii gene for 16S rRNA, partial sequence, strain: T22-1-2	AB294171	1485	ENA	426704 tax ID
[Ref.: #20218]	Alkalibacterium kapii gene for 16S rRNA, partial sequence, strain: NBRC 103247	AB681991	1481	ENA	426704 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alkalibacterium kapii NBRC 103247	GCA_007988865	contig	GenBank	426704 tax ID	*
[Ref.: #66792]	Alkalibacterium kapii strain NBRC 103247	426704.4	wgs	PATRIC	426704 tax ID	*

[Ref.: #7952]

GC-content

39.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alkalibacterium kapii strain NBRC 103247 PATRIC: 426704.4
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alkalibacterium kapii strain NBRC 103247 PATRIC: 426704.4
[Ref.: #69480]	gram-positive	yes	90.403	yes
[Ref.: #69480]	anaerobic	no	93.833	yes
[Ref.: #69480]	halophile	yes	92.585	no
[Ref.: #69480]	spore-forming	no	95.132	no
[Ref.: #69480]	glucose-util	yes	91.768	no
[Ref.: #69480]	aerobic	no	93.734	yes
[Ref.: #69480]	flagellated	no	96.867	no
[Ref.: #69480]	thermophile	no	99.566	yes
[Ref.: #69480]	motile	no	88.51	no
[Ref.: #69480]	glucose-ferment	yes	82.205	no

Availability in culture collections External links

[Ref.: #7952]

Culture collection no.

DSM 19180, NBRC 103247, NRIC 0724

[Ref.: #71802]

SI-ID 406530

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alkalibacterium gilvum sp. nov., slightly halophilic and alkaliphilic lactic acid bacterium isolated from soft and semi-hard cheeses.	Ishikawa M, Yamasato K, Kodama K, Yasuda H, Matsuyama M, Okamoto-Kainuma A, Koizumi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.042556-0	2012	*
Phylogeny	Alkalibacterium thalassium sp. nov., Alkalibacterium pelagium sp. nov., Alkalibacterium putridalgicola sp. nov. and Alkalibacterium kapii sp. nov., slightly halophilic and alkaliphilic marine lactic acid bacteria isolated from marine organisms and salted foods collected in Japan and Thailand.	Ishikawa M, Tanasupawat S, Nakajima K, Kanamori H, Ishizaki S, Kodama K, Okamoto-Kainuma A, Koizumi Y, Yamamoto Y, Yamasato K	Int J Syst Evol Microbiol	10.1099/ijs.0.65602-0	2009	*

References

#7952

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19180

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32511

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28731 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71802

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406530.1 )

#28731

IJSEM 1215 2009 ( DOI 10.1099/ijs.0.65602-0 , PubMed 19406822 )

* These data were automatically processed and therefore are not curated

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Alkalibacterium kapii strain NBRC 103247

Alkalibacterium kapii strain NBRC 103247

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