Campylobacter gracilis DSM 19528 is an anaerobe bacterium that was isolated from human gingival sulcus.
anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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Last LPSN update
2026-02-09 11:18:14 |
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Epsilonproteobacteria |
| Order Campylobacterales |
| Family Campylobacteraceae |
| Genus Campylobacter |
| Species Campylobacter gracilis |
| Full scientific name Campylobacter gracilis (Tanner et al. 1981) Vandamme et al. 1995 |
| Synonyms (1) |
| BacDive ID | Other strains from Campylobacter gracilis (8) | Type strain |
|---|---|---|
| 142467 | C. gracilis CCUG 12632 | |
| 142584 | C. gracilis CCUG 13143 | |
| 142934 | C. gracilis CCUG 15803 | |
| 144073 | C. gracilis CCUG 22762, LMG 7616 | |
| 145127 | C. gracilis CCUG 27721 | |
| 150757 | C. gracilis CCUG 42204 B | |
| 161111 | C. gracilis JCM 10958 | |
| 161112 | C. gracilis JCM 10959 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 8151 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive  | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 8151 | CHOPPED MEAT MEDIUM (DSMZ Medium 78) | Medium recipe at MediaDive | Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water | ||
| 8151 | BTU MEDIUM (DSMZ Medium 413) | Medium recipe at MediaDive | Name: BTU MEDIUM (DSMZ Medium 413) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l Na-formiate 1.8 g/l Na-fumarate 1.8 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Resazurin 0.001 g/l Vitamin K1 NaOH Distilled water |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68373 | 30089 ChEBI | acetate | - | assimilation | from API CAM |
| 68373 | 16947 ChEBI | citrate | - | assimilation | from API CAM |
| 68373 | 17634 ChEBI | D-glucose | - | assimilation | from API CAM |
| 68373 | 606565 ChEBI | hippurate | - | hydrolysis | from API CAM |
| 68373 | 17272 ChEBI | propionate | - | assimilation | from API CAM |
| 68373 | 30031 ChEBI | succinate | - | assimilation | from API CAM |
| 68373 | 16199 ChEBI | urea | - | hydrolysis | from API CAM |
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| @ref | 48907 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Metadata FA analysis | |||||||||||||||||||||||||||||||
| @ref | 48907 | ||||||||||||||||||||||||||||||
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| @ref | URE | Reduction of nitrateNIT | EsteraseEST | HIP | GGT | TTC | PYRA | L-arginine arylamidaseArgA | L-aspartic acid arylamidaseAspA | PAL | H2S productionH2S | GLU | SUT | NAL | CFZ | ACE | PROP | MLT | CIT | Erythromycin resistance (+) sensitivity (-)ERO | CAT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8151 | - | - | + | - | - | - | - | - | + | - | + | - | - | - | - | - | - | +/- | - | - | + | |
| 8151 | - | + | - | - | - | + | - | - | + | - | + | - | - | - | - | - | - | - | - | - | + | |
| 8151 | - | - | - | - | - | - | - | +/- | + | - | - | - | - | - | - | - | - | - | - | - | not determinedn.d. |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Human | - | |
| #Host Body-Site | #Oral cavity and airways | #Gingiva | |
| #Infection | #Patient | - | |
| #Host Body-Site | #Other | #Wound |
Global distribution of 16S sequence JX912515 (>99% sequence identity) for Campylobacter gracilis subclade from Microbeatlas 
 Aquatic Samples |
933 |
 Soil Samples |
708 |
 Animal Samples |
47229 |
 Plant Samples |
309 |
| Total Samples | 49179 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | Campylobacter gracilis strain FDAARGOS_1548 | complete | 824.194  | 824 | 99.8 | | ||
| 124043 | ASM2073618v1 assembly for Campylobacter gracilis FDAARGOS_1548 | complete | GCA_020736185  | 824.193 | 824 | 96.88 | | |
| 66792 | ASM119074v1 assembly for Campylobacter gracilis ATCC 33236 | complete | GCA_001190745 | 824.5 | 2645727670  | 824 | 96.3 | |
| 67770 | 53205_B01 assembly for Campylobacter gracilis NCTC12738 | contig | GCA_900446335 | 824.36 | 2808606742 | 824 | 75.74 | |
| 66792 | ASM17587v1 assembly for Campylobacter gracilis RM3268 | contig | GCA_000175875 | 553220.3 | 645951857 | 553220 | 69.49 | |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Campylobacter gracilis strain ATCC 33236 16S ribosomal RNA (rrs) gene, partial sequence | DQ174168 | 1341 |  | 824 | |
| 20218 | Bacteroides gracilis, complete 16S ribosomal RNA | L04320 | 1450 | | 824 | |
| 8151 | Campylobacter gracilis strain ATCC 33236 16S ribosomal RNA gene, partial sequence | JX912515 | 1435 | | 824 | |
| 67770 | Campylobacter gracilis gene for 16S ribosomal RNA, partial sequence, strain: JCM 8538 | AB971815 | 1474 | | 824 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Evaluation of microbiota associated with Herpesviruses in active sites of generalized aggressive periodontitis. | Passariello C, Gigola P, Testarelli L, Puttini M, Schippa S, Petti S. | Ann Stomatol (Roma) | 10.11138/ads/2017.8.2.071 | 2017 | | |
| Antimicrobial Activity of Methylene Blue Associated with Photodynamic Therapy: In Vitro Study in Multi-Species Oral Biofilm. | Bueno-Silva B, Parma-Garcia J, Frigo L, Suarez LJ, Macedo TT, Uyeda FH, Melo MARDC, Sacco R, Mourao CF, Feres M, Shibli JA, Figueiredo LC. | Pathogens | 10.3390/pathogens13040342 | 2024 | | |
| Evaluation of the Microbial Profile on the Polydioxanone Membrane and the Collagen Membrane Exposed to Multi-Species Subgingival Biofilm: An In Vitro Study. | Cintra Moreira MV, Figueiredo LC, da Cunha Melo MAR, Uyeda FH, da Silva LDA, Macedo TT, Sacco R, Mourao CF, Shibli JA, Bueno-Silva B. | Membranes (Basel) | 10.3390/membranes13120907 | 2023 | | |
| Pathogenicity | Antibacterial Activity of a Bioactive Tooth-Coating Material Containing Surface Pre-Reacted Glass in a Complex Multispecies Subgingival Biofilm. | Tanaka CJ, Rodrigues JA, Pingueiro JMS, Macedo TT, Feres M, Shibli JA, Bueno-Silva B. | Pharmaceutics | 10.3390/pharmaceutics15061727 | 2023 | |
| Propolis, Aloe Vera, Green Tea, Cranberry, Calendula, Myrrha and Salvia Properties against Periodontal Microorganisms. | Figueiredo LC, Freitas Figueiredo N, da Cruz DF, Baccelli GT, Sarachini GE, Bueno MR, Feres M, Bueno-Silva B. | Microorganisms | 10.3390/microorganisms10112172 | 2022 | | |
| "Candidatus Campylobacter infans" detection is not associated with diarrhea in children under the age of 2 in Peru. | Garcia Bardales PF, Schiaffino F, Huynh S, Paredes Olortegui M, Penataro Yori P, Pinedo Vasquez T, Manzanares Villanueva K, Curico Huansi GE, Shapiama Lopez WV, Cooper KK, Parker CT, Kosek MN. | PLoS Negl Trop Dis | 10.1371/journal.pntd.0010869 | 2022 | | |
| Phylogeny | Microbial Communities in the Extraradicular and Intraradicular Infections Associated With Persistent Apical Periodontitis. | Sun X, Yang Z, Nie Y, Hou B. | Front Cell Infect Microbiol | 10.3389/fcimb.2021.798367 | 2021 | |
| Transcriptome | Gene expression of bacterial collagenolytic proteases in root caries. | Dame-Teixeira N, Parolo CCF, Maltz M, Rup AG, Devine DA, Do T. | J Oral Microbiol | 10.1080/20002297.2018.1424475 | 2018 | |
| Pathogenicity | Effect of smokeless tobacco products on human oral bacteria growth and viability. | Liu M, Jin J, Pan H, Feng J, Cerniglia CE, Yang M, Chen H. | Anaerobe | 10.1016/j.anaerobe.2016.10.006 | 2016 | |
| Genetics | Comparative genomics of Campylobacter concisus: Analysis of clinical strains reveals genome diversity and pathogenic potential. | Gemmell MR, Berry S, Mukhopadhya I, Hansen R, Nielsen HL, Bajaj-Elliott M, Nielsen H, Hold GL. | Emerg Microbes Infect | 10.1038/s41426-018-0118-x | 2018 | |
| Effects of azithromycin, metronidazole, amoxicillin, and metronidazole plus amoxicillin on an in vitro polymicrobial subgingival biofilm model. | Soares GM, Teles F, Starr JR, Feres M, Patel M, Martin L, Teles R. | Antimicrob Agents Chemother | 10.1128/aac.04974-14 | 2015 | | |
| The vaginal microflora in relation to gingivitis. | Persson R, Hitti J, Verhelst R, Vaneechoutte M, Persson R, Hirschi R, Weibel M, Rothen M, Temmerman M, Paul K, Eschenbach D. | BMC Infect Dis | 10.1186/1471-2334-9-6 | 2009 | | |
| Phylogeny | Rapid detection of the Chlamydiaceae and other families in the order Chlamydiales: three PCR tests. | Everett KD, Hornung LJ, Andersen AA. | J Clin Microbiol | 10.1128/jcm.37.3.575-580.1999 | 1999 | |
| Pathogenicity | In vitro activity of tomopenem (CS-023/RO4908463) against anaerobic bacteria. | Tanaka K, Mikamo H, Nakao K, Ichiishi T, Goto T, Yamagishi Y, Watanabe K. | Antimicrob Agents Chemother | 10.1128/aac.00595-08 | 2009 | |
| Phylogeny | Use of PCR and sodium dodecyl sulfate-polyacrylamide gel electrophoresis techniques for differentiation of Prevotella intermedia sensu stricto and Prevotella nigrescens. | Premaraj T, Kato N, Fukui K, Kato H, Watanabe K. | J Clin Microbiol | 10.1128/jcm.37.4.1057-1061.1999 | 1999 | |
| Enzymology | Rapid urease test (RUT) for evaluation of urease activity in oral bacteria in vitro and in supragingival dental plaque ex vivo. | Dahlen G, Hassan H, Blomqvist S, Carlen A. | BMC Oral Health | 10.1186/s12903-018-0541-3 | 2018 | |
| Enzymology | Detection of Campylobacter spp. in chicken fecal samples by real-time PCR. | Lund M, Nordentoft S, Pedersen K, Madsen M. | J Clin Microbiol | 10.1128/jcm.42.11.5125-5132.2004 | 2004 | |
| Phylogeny | The site-specific subgingival microbiome across periodontal conditions and its relationship with clinical parameters. | Chen K, Ren X, Du R, Lei L, Cheng R, Hu T. | Clin Oral Investig | 10.1007/s00784-025-06625-6 | 2025 | |
| Oral microbiota signature predicts the prognosis of colorectal carcinoma. | Zhou SH, Du Y, Xue WQ, He MJ, Zhou T, Zhao ZY, Pei L, Chen YW, Xie JR, Huang CL, He YQ, Wang TM, Liao Y, Jia WH. | NPJ Biofilms Microbiomes | 10.1038/s41522-025-00702-0 | 2025 | | |
| d-aspartate, an amino-acid important for human health, supports anaerobic respiration in several Campylobacter species. | Benoit SL, Maier RJ. | Res Microbiol | 10.1016/j.resmic.2024.104219 | 2024 | | |
| Periodontitis and Oral Bacteria Related to Rheumatoid Arthritis: A Case-Control Study. | Hashimoto H, Nonoyama T, Takami Y, Hashimoto S, Shimazaki Y. | Int Dent J | 10.1016/j.identj.2025.103856 | 2025 | | |
| Phylogeny | Management of a Large Cerebral Abscess in Children Caused by Campylobacter gracilis: A Case Report and Review of the Literature. | Arakawa Y, Yagi Y, Mimoto A, Nishida Y, Kuwana S, Nakai E, Ueba T, Fujieda M, Yamagishi Y. | Cureus | 10.7759/cureus.62744 | 2024 | |
| Microbial resistance to oral antiseptics used in hospitalized patients: A systematic scoping review of randomized clinical trials. | Ardila CM, Bedoya-Garcia JA. | Spec Care Dentist | 10.1111/scd.12781 | 2023 | | |
| Gastric bacteria as potential biomarkers for the diagnosis of atrophic gastritis. | Dong T, Lan X, Fan B, Jia S, Liu F, Feng Q, Sun Y, Zhong N, Liu S. | Mol Biol Rep | 10.1007/s11033-022-08001-z | 2023 | | |
| Exploring the role of gut microbiota in rheumatoid arthritis: the effects of diet and drug supplementation. | Genc DE, Ozbek O, Ulgen KO. | BMC Rheumatol | 10.1186/s41927-025-00541-8 | 2025 | | |
| Bacterial Flora in Screw-Fixed Superstructures with Different Sealing Materials: A Comparative Clinical Trial. | Yamaguchi K, Munakata M, Ishii K, Uesugi T. | Bioengineering (Basel) | 10.3390/bioengineering11020195 | 2024 | | |
| Microbiological profile of canaliculitis and their antibiotic susceptibility patterns: A 11-year review at a referral eye care centre. | Anand AR, Harinee R, Jeyalatha MV, Poonam NS, Therese KL, Rajeshwari H, Narasimhan L, Gopinath R. | Indian J Med Microbiol | 10.1016/j.ijmmb.2022.05.007 | 2022 | | |
| Oral Microbiome and Subsequent Risk of Head and Neck Squamous Cell Cancer. | Kwak S, Wang C, Usyk M, Wu F, Freedman ND, Huang WY, McCullough ML, Um CY, Shrubsole MJ, Cai Q, Li H, Ahn J, Hayes RB. | JAMA Oncol | 10.1001/jamaoncol.2024.4006 | 2024 | | |
| Diverse bacterial profile in extraradicular biofilms and periradicular lesions associated with persistent apical periodontitis. | Zhang C, Yang Z, Hou B. | Int Endod J | 10.1111/iej.13512 | 2021 | | |
| Phylogeny | Tracheal and cloacal bacterial diversity of red listed Eastern Imperial Eagle (Aquila heliaca). | Murtskhvaladze M, Ninua L, Budagashvili N, Tevdoradze E, Gurgenidze Z, Kotorashvili A, Kotaria N, Gavashelishvili A, Javakhishvili Z. | Front Microbiol | 10.3389/fmicb.2025.1477032 | 2025 | |
| The impact of vaping behavior on functional changes within the subgingival microbiome. | Yang I, He X, Jeon J, Claussen H, Arthur R, Cushenan P, Weaver SR, Luo R, Black M, Shannahan J, Wright C. | Sci Rep | 10.1038/s41598-025-17121-y | 2025 | | |
| Salivary microbiota composition before and after use of proton pump inhibitors in patients with laryngopharyngeal reflux: a self-control study. | Cui X, Yin L, Zhang Y, Jiang X, Li L, Bi X. | BMC Oral Health | 10.1186/s12903-024-05000-3 | 2024 | | |
| Genetics | A metagenome-wide association study of gut microbiota in hepatitis B virus-related cirrhosis in northwest China. | Feng M, Chai Y, Li J, Wang Q, Zhang D. | Front Genet | 10.3389/fgene.2025.1619911 | 2025 | |
| A prospective evaluation of subgingival irrigation with i-PRF following non-surgical treatment of peri-implantitis. | Deterville L, Lasserre JF, Toma S. | Front Dent Med | 10.3389/fdmed.2025.1568889 | 2025 | | |
| Changes in subgingival microflora in patients with fixed orthodontic appliances. | Arbutina A, Radman IK, Umicevic-Davidovic M, Arapovic-Savic M, Deri A, Arbutina R, Marin S, Josipovic R, Trtic N. | Dental Press J Orthod | 10.1590/2177-6709.30.1.e2524154.oar | 2025 | | |
| STITCH enabled protein-protein interactions between Phyllanthus emblica and peri-implant microbiome. | Selladurai K, Rohinikumar S, Rajendra Prabu A, Veeraraghavan VP, Nesappan T, Eswaramoorthy R. | Bioinformation | 10.6026/97320630019491 | 2023 | | |
| Characterization of Antimicrobial Resistance in Campylobacter Species from Broiler Chicken Litter | Tran T, Checkley S, Caffrey N, Mainali C, Gow S, Agunos A, Liljebjelke K. | Antibiotics (Basel) | 2025 | | ||
| Genetics | Identification of Novel Gene-Specific Markers for Differentiating Various Pathogenic Campylobacter Species Using a Pangenome Analysis Approach. | Kuufire E, Bentum KE, Nyarku R, Osei V, Elrefaey A, James T, Woube Y, Folitse R, Samuel T, Abebe W. | Pathogens | 10.3390/pathogens14050477 | 2025 | |
| Microbiome Comparison and Pathogen Identification for Three Migrating Passerines Captured During Spring Season in Jordan Using 16S rRNA Sequencing. | Al-Hmoud N, Alrwashdeh M, Khoury F, Abdien A, Hayek A, Alzghoul G, Islaieh A, Erickson CE, Bartlow AW, Owen JC, Fair JM. | Integr Comp Biol | 10.1093/icb/icaf015 | 2025 | | |
| Functional and taxonomic dysbiosis of the supragingival plaque metagenome in Behçet's disease. | Sapthanakorn T, Choopong P, Sermsripong W, Boriboonhirunsarn C, Khamwachirapitak C, Krasaesin A, Sutthiboonyaphan P, Siripaiboonpong N, Mahanonda R, Wiriyakijja P, Pelekos G, Porntaveetus T, Srithanyarat SS. | J Oral Microbiol | 10.1080/20002297.2025.2552165 | 2025 | | |
| Evaluation of Association of Oral Bacterial Profile with HBV and HCV Infection and T Lymphocyte Level in HIV-Positive Patients. | Lavaee F, Modarresi F, Amookhteh S, Amiri MA. | Int J Dent | 10.1155/2022/8622181 | 2022 | | |
| Data-driven mathematical and visualization approaches for removing rare features for Compositional Data Analysis (CoDA). | Ortiz-Velez A, Kelley ST. | NAR Genom Bioinform | 10.1093/nargab/lqad110 | 2024 | | |
| The Relationship between the Oral Microbiota and Metabolic Syndrome. | Prince Y, Davison GM, Davids SFG, Erasmus RT, Kengne AP, Graham LM, Raghubeer S, Matsha TE. | Biomedicines | 10.3390/biomedicines11010003 | 2022 | | |
| Impact of toothpaste use on the subgingival microbiome: a pilot randomized clinical trial. | Iniesta M, Vasconcelos V, Laciar F, Matesanz P, Sanz M, Herrera D. | BMC Oral Health | 10.1186/s12903-025-06159-z | 2025 | | |
| Influence of obesity on subgingival microbiota composition in subjects with different periodontal status: a systematic review. | Alarcon-Sanchez MA. | Rev Cient Odontol (Lima) | 10.21142/2523-2754-1201-2024-187 | 2024 | | |
| Oral Function and the Oral Microbiome in the Elderly in the Kyotango Area. | Yamamoto Y, Yamamoto T, Miyamoto N, Kinoshita K, Nishikawa S, Adachi T, Takizawa S, Inoue R, Matoba S, Kanamura N. | Dent J (Basel) | 10.3390/dj12010016 | 2024 | | |
| Influence of species composition and cultivation condition on peri-implant biofilm dysbiosis in vitro. | Heine N, Bittroff K, Szafranski SP, Duitscher M, Behrens W, Vollmer C, Mikolai C, Kommerein N, Debener N, Frings K, Heisterkamp A, Scheper T, Torres-Mapa ML, Bahnemann J, Stiesch M, Doll-Nikutta K. | Front Oral Health | 10.3389/froh.2025.1649419 | 2025 | | |
| Multi-year comparison of VITEK MS performance for identification of rarely encountered pathogenic Gram-negative organisms (GNOs) in a large integrated Canadian healthcare region. | Church DL, Griener T, Gregson D. | Microbiol Spectr | 10.1128/spectrum.02276-24 | 2024 | | |
| Profiles of oral microbiota and metabolites in periodontitis and benign prostatic hyperplasia patients: a pilot study. | Zhu C, Li L-Y, Li C, Wu L, Zhang Y-Y, Yao Y, Yang J, Wang S-Y, Xing L-M, Zeng X-T, Fang C. | Microbiol Spectr | 10.1128/spectrum.03376-24 | 2025 | | |
| Enhanced dominance of nitrate-reducing bacteria using a combination of nitrate and erythritol in in vitro cultured oral biofilm. | Fujii A, Akatsu T, Souno H, Kawano S, Minegishi Y, Ota N. | J Oral Microbiol | 10.1080/20002297.2025.2526069 | 2025 | | |
| Phylogeny | The effect of cigarette smoking on the oral microbiota in a South African population using subgingival plaque samples. | Prince Y, Davison GM, Davids SFG, Erasmus RT, Kengne AP, Raghubeer S, Matsha TE. | Heliyon | 10.1016/j.heliyon.2024.e31559 | 2024 | |
| Metabolism | Colon cancer in Appalachian Kentucky: Unique genetic, microbiome and obesity findings in a cohort comparison. | Chow Z, Liu J, He D, Wang C, Gan T, Mansour A, Shaker N, Dravillas C, Hoyd R, Durbin E, Napier D, Gao T, Schaberg K, Huang L, Ulrich N, Siegel E, Edge S, Cook L, Salhia B, Churchman M, Kolesar J, Spakowicz D, Evers BM, Bocklage T. | HGG Adv | 10.1016/j.xhgg.2025.100527 | 2025 | |
| Pyrosequencing of the subgingival microbiome in peri-implantitis after non-surgical mechanical debridement therapy. | Nie J, Zhang Q, Zheng H, Xu LX, Wang XY, Chen F. | J Periodontal Res | 10.1111/jre.12708 | 2020 | | |
| Phylogeny | Relationship between Gut, Blood, Aneurysm Wall and Thrombus Microbiome in Abdominal Aortic Aneurysm Patients. | Nemes-Nikodem E, Gyurok GP, Dunai ZA, Makra N, Hofmeister B, Szabo D, Sotonyi P, Hidi L, Szappanos A, Kovacs G, Ostorhazi E. | Int J Mol Sci | 10.3390/ijms25168844 | 2024 | |
| Gut dysbiosis is associated with aortic aneurysm formation and progression in Takayasu arteritis. | Manabe Y, Ishibashi T, Asano R, Tonomura S, Maeda Y, Motooka D, Ueda J, Yanagawa M, Edamoto-Taira Y, Chikaishi-Kirino T, Masaki T, Inagaki T, Nakamura S, Katada Y, Okazawa M, Narazaki M, Ogo T, Kumanogoh A, Nakaoka Y. | Arthritis Res Ther | 10.1186/s13075-023-03031-9 | 2023 | | |
| Phylogeny | Probiotics Support Resilience of the Oral Microbiota during Resolution after Experimental Gingivitis-A Randomized, Double-Blinded, Placebo-Controlled Trial. | Lundtorp Olsen C, Massarenti L, Vendius VFD, Gursoy UK, Van Splunter A, Bikker FJ, Gursoy M, Damgaard C, Markvart M, Belstrom D. | Nutrients | 10.3390/nu15224805 | 2023 | |
| Genetics | Comprehensive evaluation of methods for differential expression analysis of metatranscriptomics data. | Cho H, Qu Y, Liu C, Tang B, Lyu R, Lin BM, Roach J, Azcarate-Peril MA, Aguiar Ribeiro A, Love MI, Divaris K, Wu D. | Brief Bioinform | 10.1093/bib/bbad279 | 2023 | |
| From colon wall to tumor niche: Unraveling the microbiome's role in colorectal cancer progression. | Garcia Menendez G, Sichel L, Lopez MDC, Hernandez Y, Arteaga E, Rodriguez M, Fleites V, Fernandez LT, Cano RJ. | PLoS One | 10.1371/journal.pone.0311233 | 2024 | | |
| Floc-size effects of the pathogenic bacteria in a membrane bioreactor plant. | Zhang S, He Z, Meng F. | Environ Int | 10.1016/j.envint.2019.04.002 | 2019 | | |
| Evaluation of microbiome in primary and permanent dentition in grade C periodontitis in young individuals. | Koo SS, Fernandes JG, Li L, Huang H, Aukhil I, Harrison P, Diaz PI, Shaddox LM. | J Periodontol | 10.1002/jper.23-0504 | 2024 | | |
| The impact of predatory bacteria on experimental periodontitis. | Silva PHF, Oliveira LFF, Cardoso RS, Ricoldi MST, Figueiredo LC, Salvador SL, Palioto DB, Furlaneto FAC, Messora MR. | J Periodontol | 10.1002/jper.18-0485 | 2019 | | |
| Oral Microbiome in Orthodontic Acrylic Retainer. | Kasibut P, Kuvatanasuchati J, Thaweboon B, Sirisoontorn I. | Polymers (Basel) | 10.3390/polym14173583 | 2022 | | |
| Phylogeny | The intensive physical activity causes changes in the composition of gut and oral microbiota. | Urban S, Chmura O, Wator J, Panek P, Zapala B. | Sci Rep | 10.1038/s41598-024-71684-w | 2024 | |
| Longitudinal Microbiome Changes in Supragingival Biofilm Transcriptomes Induced by Orthodontics. | Babikow E, Ghaltakhchyan N, Livingston T, Qu Y, Liu C, Hoxie A, Sulkowski T, Bocklage C, Marsh A, Phillips ST, Mitchell KB, Ribeiro AA, Jackson TH, Roach J, Wu D, Divaris K, Jacox LA. | JDR Clin Trans Res | 10.1177/23800844231199393 | 2024 | | |
| Phylogeny | Full-length 16S rDNA sequencing based on Oxford Nanopore Technologies revealed the association between gut-pharyngeal microbiota and tuberculosis in cynomolgus macaques. | Sawaswong V, Chanchaem P, Klomkliew P, Rotcheewaphan S, Meesawat S, Kemthong T, Kaewparuehaschai M, Noradechanon K, Ekatat M, Kanitpun R, Srilohasin P, Warit S, Chaiprasert A, Malaivijitnond S, Payungporn S. | Sci Rep | 10.1038/s41598-024-53880-w | 2024 | |
| Microbiota of periodontal pockets and root canals in induced experimental periodontal disease in dogs. | Gade-Neto CR, Rodrigues RR, Louzada LM, Arruda-Vasconcelos R, Teixeira FB, Viana Casarin RC, Gomes BPFA. | J Investig Clin Dent | 10.1111/jicd.12439 | 2019 | | |
| Predicting preterm birth using machine learning techniques in oral microbiome. | Hong YM, Lee J, Cho DH, Jeon JH, Kang J, Kim MG, Lee S, Kim JK. | Sci Rep | 10.1038/s41598-023-48466-x | 2023 | | |
| Phylogeny | The prevalence of motility-related genes within the human oral microbiota. | Rocha ST, Shah DD, Zhu Q, Shrivastava A. | Microbiol Spectr | 10.1128/spectrum.01264-24 | 2025 | |
| A randomised, double-blind clinical study into the effect of zinc citrate trihydrate toothpaste on oral plaque microbiome ecology and function. | Adams SE, Cawley AK, Arnold D, Hoptroff MJ, Slomka V, Matheson JR, Marriott RE, Gemmell MR, Marsh PD. | Sci Rep | 10.1038/s41598-025-92545-0 | 2025 | | |
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| Is the Physiological Composition of the Vaginal Microbiome Altered in High-Risk HPV Infection of the Uterine Cervix? | Rokos T, Holubekova V, Kolkova Z, Hornakova A, Pribulova T, Kozubik E, Biringer K, Kudela E. | Viruses | 10.3390/v14102130 | 2022 | | |
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| Lactobacillus acidophilus impairs the establishment of pathogens in a subgingival multispecies biofilm. | Bueno MR, Dudu-Silva G, Macedo TT, Gomes APAP, Rodrigues Oliveira Braga A, Aguiar Silva LD, Bueno-Silva B. | Front Dent Med | 10.3389/fdmed.2023.1212773 | 2023 | | |
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| Inter-kingdom interactions and environmental influences on the oral microbiome in severe early childhood caries. | Weng L, Cui Y, Jian W, Zhang Y, Pang L, Cao Y, Zhou Y, Liu W, Lin H, Tao Y. | Microbiol Spectr | 10.1128/spectrum.02518-24 | 2025 | | |
| Palaeoproteomic investigation of an ancient human skeleton with abnormal deposition of dental calculus. | Uchida-Fukuhara Y, Shimamura S, Sawafuji R, Nishiuchi T, Yoneda M, Ishida H, Matsumura H, Tsutaya T. | Sci Rep | 10.1038/s41598-024-55779-y | 2024 | | |
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| Transcriptome | Host Transcriptome and Microbial Variation in Relation to Visceral Hyperalgesia. | Costa CJ, Prescott S, Fourie NH, Abey SK, Sherwin LB, Rahim-Williams B, Joseph PV, Posada-Quintero H, Hoffman RK, Henderson WA. | Nutrients | 10.3390/nu17050921 | 2025 | |
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| Non-tuberculous mycobacteria enhance the tryptophan-kynurenine pathway to induce immunosuppression and facilitate pulmonary colonization. | Li L, Shao J, Tong C, Gao W, Pan P, Qi C, Gao C, Zhang Y, Zhu Y, Chen C. | Front Cell Infect Microbiol | 10.3389/fcimb.2024.1455605 | 2024 | | |
| HIV infection and exposure is associated with increased cariogenic taxa, reduced taxonomic turnover, and homogenized spatial differentiation for the supragingival microbiome. | Mann AE, Aumend C, Crull S, O'Connell LM, Osagie E, Akhigbe P, Obuekwe O, Omoigberale A, Rowe M, Blouin T, Soule A, Kelly C, DOMHaIN Study Team, Burne RA, Coker MO, Richards VP. | Microbiome | 10.1186/s40168-025-02123-9 | 2025 | | |
| Detection of Sutterella spp. in Broiler Liver and Breast. | Derqaoui S, Oukessou M, Attrassi K, Elftouhy FZ, Nassik S. | Front Vet Sci | 10.3389/fvets.2022.859902 | 2022 | | |
| Colonization dynamics of subgingival microbiota in recently installed dental implants compared to healthy teeth in the same individual: a 6-month prospective observational study. | Silva-Boghossian CM, Duarte PT, Silva DGD, Lourenco TGB, Colombo APV. | J Appl Oral Sci | 10.1590/1678-7757-2023-0134 | 2023 | | |
| Host-microbe computational proteomic landscape in oral cancer revealed key functional and metabolic pathways between Fusobacterium nucleatum and cancer progression. | Munoz-Grez CP, Vidal MA, Rojas TB, Ferrada LE, Zuniga FA, Vera AA, Sanhueza SA, Quiroga RA, Cabrera CD, Antilef BE, Cartes RA, Acevedo MP, Fraga MA, Alarcon-Zapata PF, Hernandez MA, Salas-Burgos AM, Tapia-Belmonte F, Yanez ML, Riquelme EM, Gonzalez WA, Rivera CA, Onate AA, Lamperti LI, Nova-Lamperti E. | Int J Oral Sci | 10.1038/s41368-024-00326-8 | 2025 | | |
| Roles of intralesional bacteria in the initiation and progression of oral squamous cell carcinoma. | Luo Z, Lv S, Lou F, Yan L, Xu J, Kang N, Dong Y, Jin X. | Cancer Med | 10.1002/cam4.70209 | 2024 | | |
| Genetics | Uncovering the boundaries of Campylobacter species through large-scale phylogenetic and nucleotide identity analyses. | Wu R, Payne M, Zhang L, Lan R. | mSystems | 10.1128/msystems.01218-23 | 2024 | |
| Metabolomic profiles of obesity and subgingival microbiome in periodontally healthy individuals: A cross-sectional study. | Khocht A, Paster B, Lenoir L, Irani C, Fraser G. | J Clin Periodontol | 10.1111/jcpe.13860 | 2023 | | |
| Oral Microbiota Profile in Patients with Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis. | Esberg A, Johansson L, Berglin E, Mohammad AJ, Jonsson AP, Dahlqvist J, Stegmayr B, Johansson I, Rantapaa-Dahlqvist S. | Microorganisms | 10.3390/microorganisms10081572 | 2022 | | |
| Pathogenicity | CCL5's Role in Periodontal Disease: A Narrative Review. | Barczak K, Drozdzik A, Bosiacki M, Lagocka R, Cenariu D, Uriciuc WA, Baranowska-Bosiacka I. | Int J Mol Sci | 10.3390/ijms242417332 | 2023 | |
| Investigating the Significance of Non-jejuni/coli Campylobacter Strains in Patients with Diarrhea. | Teksoy N, Ilktac M, Ilktac M, Ongen B. | Healthcare (Basel) | 10.3390/healthcare11182562 | 2023 | | |
| Associations between Host Genetic Variants and Subgingival Microbiota in Patients with the Metabolic Syndrome. | Nibali L, Stephen AS, Allaker RP, Di Pino A, Terranova V, Pisano M, Di Marca S, Ferrara V, Scicali R, Purrello F, Donos N, Regolo M, Malatino L. | Int J Mol Sci | 10.3390/ijms242316649 | 2023 | | |
| Phylogeny | On the Oral Microbiome of Oral Potentially Malignant and Malignant Disorders: Dysbiosis, Loss of Diversity, and Pathogens Enrichment. | Herreros-Pomares A, Hervas D, Bagan-Debon L, Jantus-Lewintre E, Gimeno-Cardona C, Bagan J. | Int J Mol Sci | 10.3390/ijms24043466 | 2023 | |
| Efficacy of the additional use of subgingival air-polishing with erythritol powder in the treatment of periodontitis patients: a randomized controlled clinical trial. Part II: effect on sub-gingival microbiome. | Mensi M, Caselli E, D'Accolti M, Soffritti I, Farina R, Scotti E, Guarnelli ME, Fabbri C, Garzetti G, Marchetti S, Sordillo A, Trombelli L. | Clin Oral Investig | 10.1007/s00784-022-04811-4 | 2023 | | |
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| A new member of the flavodoxin superfamily from Fusobacterium nucleatum that functions in heme trafficking and reduction of anaerobilin. | McGregor AK, Chan ACK, Schroeder MD, Do LTM, Saini G, Murphy MEP, Wolthers KR. | J Biol Chem | 10.1016/j.jbc.2023.104902 | 2023 | | |
| Characteristics of Microbial Distribution in Different Oral Niches of Oral Squamous Cell Carcinoma. | Nie F, Wang L, Huang Y, Yang P, Gong P, Feng Q, Yang C. | Front Cell Infect Microbiol | 10.3389/fcimb.2022.905653 | 2022 | | |
| Grade C molar-incisor pattern periodontitis subgingival microbial profile before and after treatment. | Velsko IM, Harrison P, Chalmers N, Barb J, Huang H, Aukhil I, Shaddox L. | J Oral Microbiol | 10.1080/20002297.2020.1814674 | 2020 | | |
| Oral microbiome associated with differential ratios of Porphyromonas gingivalis and Streptococcus cristatus. | Wang Q, Wang B-Y, Pratap S, Xie H. | Microbiol Spectr | 10.1128/spectrum.03482-23 | 2024 | | |
| Amplicon-based microbiome study highlights the loss of diversity and the establishment of a set of species in patients with dentin caries. | Wolff D, Frese C, Schoilew K, Dalpke A, Wolff B, Boutin S. | PLoS One | 10.1371/journal.pone.0219714 | 2019 | | |
| The Role of Gut and Oral Microbiota in the Formation and Rupture of Intracranial Aneurysms: A Literature Review. | Joerger AK, Albrecht C, Rothhammer V, Neuhaus K, Wagner A, Meyer B, Wostrack M. | Int J Mol Sci | 10.3390/ijms25010048 | 2023 | | |
| Transcriptome | Placental TLR recognition of salivary and subgingival microbiota is associated with pregnancy complications. | Pax K, Buduneli N, Alan M, Meric P, Gurlek O, Dabdoub SM, Kumar PS. | Microbiome | 10.1186/s40168-024-01761-9 | 2024 | |
| Enzymology | Epstein-Barr Virus and Peri-Implantitis: A Systematic Review and Meta-Analysis. | Roca-Millan E, Dominguez-Minger J, Schemel-Suarez M, Estrugo-Devesa A, Mari-Roig A, Lopez-Lopez J. | Viruses | 10.3390/v13020250 | 2021 | |
| Phylogeny | Microbial analysis of subgingival plaque samples compared to that of whole saliva in patients with periodontitis. | Haririan H, Andrukhov O, Bertl K, Lettner S, Kierstein S, Moritz A, Rausch-Fan X. | J Periodontol | 10.1902/jop.2013.130306 | 2014 | |
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| Enzymology | Subgingival microflora in inflammatory bowel disease patients with untreated periodontitis. | Brito F, Zaltman C, Carvalho AT, Fischer RG, Persson R, Gustafsson A, Figueredo CM. | Eur J Gastroenterol Hepatol | 10.1097/meg.0b013e32835a2b70 | 2013 | |
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| Oral bacteria in infective endocarditis requiring surgery: a retrospective analysis of 134 patients. | Deppe H, Reitberger J, Behr AV, Vitanova K, Lange R, Wantia N, Wagenpfeil S, Sculean A, Ritschl LM. | Clin Oral Investig | 10.1007/s00784-022-04465-2 | 2022 | | |
| Red complex: Polymicrobial conglomerate in oral flora: A review. | Mohanty R, Asopa SJ, Joseph MD, Singh B, Rajguru JP, Saidath K, Sharma U. | J Family Med Prim Care | 10.4103/jfmpc.jfmpc_759_19 | 2019 | | |
| Identification of FtfL as a novel target of berberine in intestinal bacteria. | Yan J, Fang C, Yang G, Li J, Liu Y, Zhang L, Yang P, Fang J, Gu Y, Zhang Y, Jiang W. | BMC Biol | 10.1186/s12915-023-01778-w | 2023 | | |
| A microbiological profile of unexposed and exposed pulp space of primary endodontic infections by checkerboard DNA-DNA hybridization. | Sassone LM, Fidel RA, Faveri M, Figueiredo L, Fidel SR, Feres M. | J Endod | 10.1016/j.joen.2012.03.021 | 2012 | | |
| Profiles of subgingival microbiomes and gingival crevicular metabolic signatures in patients with amnestic mild cognitive impairment and Alzheimer's disease. | Qiu C, Zhou W, Shen H, Wang J, Tang R, Wang T, Xie X, Hong B, Ren R, Wang G, Song Z. | Alzheimers Res Ther | 10.1186/s13195-024-01402-1 | 2024 | | |
| Enzymology | Subgingival Microbiota of Mexicans with Type 2 Diabetes with Different Periodontal and Metabolic Conditions. | Rodriguez-Hernandez AP, Marquez-Corona ML, Pontigo-Loyola AP, Medina-Solis CE, Ximenez-Fyvie LA. | Int J Environ Res Public Health | 10.3390/ijerph16173184 | 2019 | |
| Microbiome of Saliva and Plaque in Children According to Age and Dental Caries Experience. | Lee E, Park S, Um S, Kim S, Lee J, Jang J, Jeong HO, Shin J, Kang J, Lee S, Jeong T. | Diagnostics (Basel) | 10.3390/diagnostics11081324 | 2021 | | |
| The Oral Microbiome in Treatment-Naïve Paediatric IBD Patients Exhibits Dysbiosis Related to Disease Severity that Resolves Following Therapy. | Elmaghrawy K, Fleming P, Fitzgerald K, Cooper S, Dominik A, Hussey S, Moran GP. | J Crohns Colitis | 10.1093/ecco-jcc/jjac155 | 2023 | | |
| Bacterial colonization of a power-driven water flosser during regular use. A proof-of-principle study. | Bertl K, Edlund Johansson P, Bruckmann C, Leonhard M, Davies JR, Stavropoulos A. | Clin Exp Dent Res | 10.1002/cre2.393 | 2021 | | |
| Genetics | Oral Microbiome in Nonsmoker Patients with Oral Cavity Squamous Cell Carcinoma, Defined by Metagenomic Shotgun Sequencing. | Ganly I, Hao Y, Rosenthal M, Wang H, Migliacci J, Huang B, Katabi N, Brown S, Tang YW, Pei Z, Yang L. | Cancers (Basel) | 10.3390/cancers14246096 | 2022 | |
| Effects of wearing personal protective equipment during COVID-19 pandemic on composition and diversity of skin bacteria and fungi of medical workers. | Lin X, Li YZ, Chen T, Min SH, Wang DF, Ding MM, Jiang G. | J Eur Acad Dermatol Venereol | 10.1111/jdv.18216 | 2022 | | |
| Ancient oral microbiomes support gradual Neolithic dietary shifts towards agriculture. | Quagliariello A, Modi A, Innocenti G, Zaro V, Conati Barbaro C, Ronchitelli A, Boschin F, Cavazzuti C, Dellu E, Radina F, Sperduti A, Bondioli L, Ricci S, Lognoli M, Belcastro MG, Mariotti V, Caramelli D, Mariotti Lippi M, Cristiani E, Martino ME, Martino ME, Muntoni IM, Lari M. | Nat Commun | 10.1038/s41467-022-34416-0 | 2022 | | |
| Phylogeny | Subgingival microbiome of experimental gingivitis: shifts associated with the use of chlorhexidine and N-acetyl cysteine mouthwashes. | Al-Kamel A, Baraniya D, Al-Hajj WA, Halboub E, Abdulrab S, Chen T, Al-Hebshi NN. | J Oral Microbiol | 10.1080/20002297.2019.1608141 | 2019 | |
| Tolerance to intraoral biofilms and their effectiveness in improving mouth dryness and modifying oral microbiota in patients with primary Sjögren's syndrome: "Predelfi study". | Orliaguet M, Fong SB, Le Pottier L, Meuric V, Boisrame S, Bonnaure-Mallet M, Pers JO. | Front Microbiol | 10.3389/fmicb.2023.1071683 | 2023 | | |
| The Associations of Periodontopathic Bacteria and Oral Candida with Periodontal Inflamed Surface Area in Older Adults Receiving Supportive Periodontal Therapy. | Shigeishi H, Nakamura M, Oka I, Su CY, Yano K, Ishikawa M, Kaneyasu Y, Sugiyama M, Ohta K. | Diagnostics (Basel) | 10.3390/diagnostics11081397 | 2021 | | |
| Metabolism | Defining Metaniches in the Oral Cavity According to Their Microbial Composition and Cytokine Profile. | Seidel CL, Gerlach RG, Wiedemann P, Weider M, Rodrian G, Hader M, Frey B, Gaipl US, Bozec A, Cieplik F, Kirschneck C, Bogdan C, Golz L. | Int J Mol Sci | 10.3390/ijms21218218 | 2020 | |
| Association between the nasopharyngeal microbiome and metabolome in patients with COVID-19. | Liu J, Liu S, Zhang Z, Lee X, Wu W, Huang Z, Lei Z, Xu W, Chen D, Wu X, Guo Y, Peng L, Lin B, Chong Y, Mou X, Shi M, Lan P, Chen T, Zhao W, Gao Z. | Synth Syst Biotechnol | 10.1016/j.synbio.2021.06.002 | 2021 | | |
| The Oral Microbiome in Periodontal Health. | Lenartova M, Tesinska B, Janatova T, Hrebicek O, Mysak J, Janata J, Najmanova L. | Front Cell Infect Microbiol | 10.3389/fcimb.2021.629723 | 2021 | | |
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| Microbiota of interdental space of adolescents according to Risk of Caries: A cross-sectional study protocol. | Inquimbert C, Bourgeois D, Giraudeau N, Tramini P, Viennot S, Dussart C, Carrouel F. | Contemp Clin Trials Commun | 10.1016/j.conctc.2019.100444 | 2019 | | |
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| Transcriptome | Biocompatibility of ZrO2 vs. Y-TZP Alloys: Influence of Their Composition and Surface Topography. | Tchinda A, Chezeau L, Pierson G, Kouitat-Njiwa R, Rihn BH, Bravetti P. | Materials (Basel) | 10.3390/ma15134655 | 2022 | |
| Taxonomic Analysis of Oral Microbiome during Orthodontic Treatment. | Campobasso A, Lo Muzio E, Battista G, Ciavarella D, Crincoli V, Lo Muzio L. | Int J Dent | 10.1155/2021/8275181 | 2021 | | |
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| Phylogeny | Increased tooth brushing frequency is associated with reduced gingival pocket bacterial diversity in patients with intracranial aneurysms. | Pyysalo MJ, Mishra PP, Sundstrom K, Lehtimaki T, Karhunen PJ, Pessi T. | PeerJ | 10.7717/peerj.6316 | 2019 | |
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| The oral microbiome and breast cancer and nonmalignant breast disease, and its relationship with the fecal microbiome in the Ghana Breast Health Study. | Wu Z, Byrd DA, Wan Y, Ansong D, Clegg-Lamptey JN, Wiafe-Addai B, Edusei L, Adjei E, Titiloye N, Dedey F, Aitpillah F, Oppong J, Vanderpuye V, Osei-Bonsu E, Dagnall CL, Jones K, Hutchinson A, Hicks BD, Ahearn TU, Shi J, Knight R, Biritwum R, Yarney J, Wiafe S, Awuah B, Nyarko K, Figueroa JD, Sinha R, Garcia-Closas M, Brinton LA, Vogtmann E. | Int J Cancer | 10.1002/ijc.34145 | 2022 | | |
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| Electronic Cigarette Use Promotes a Unique Periodontal Microbiome. | Thomas SC, Xu F, Pushalkar S, Lin Z, Thakor N, Vardhan M, Flaminio Z, Khodadadi-Jamayran A, Vasconcelos R, Akapo A, Queiroz E, Bederoff M, Janal MN, Guo Y, Aguallo D, Gordon T, Corby PM, Kamer AR, Li X, Saxena D. | mBio | 10.1128/mbio.00075-22 | 2022 | | |
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How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive2133.20251217.10
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BacDive in 2025: the core database for prokaryotic strain data
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