Arcobacter nitrofigilis (CCUG 15892, CECT 7204, DSM 7299)

Name: Arcobacter nitrofigilis (CCUG 15892, CECT 7204, DSM 7299)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2092

Type strain

Strain Designation CI

Culture col. no. CCUG 15892 CECT 7204 DSM 7299 ATCC 33309 CCUG 15893 5 more

NCBI tax ID(s) 572480 28199

Special Collections DSMZ CCUG JCM CIP

History DSMZ <- CCUG <- C.R. McClung JCM <-- LMG 7604 <-- CCUG 15892 <-- C. R. McClung; Beltsville Agric. Res. Center, USA; CI. CIP <- 1994, LMG <- 1986, CCUG, Campylobacter nitrofragilis <- S. Neill <- 1984, McClung, Canada

Links

Arcobacter nitrofigilis CI is a microaerophile, Gram-negative, motile bacterium that was isolated from roots of Spartina alterniflora .

Gram-negative motile rod-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 978

LMG 7604,ATCC 33309,CCUG 15892,CCUG 15893,LMG 6619,JCM 33357,DSM 7299,NCTC 12251,CIP 103745,KCTC 2688,CECT 7204

@ref 20215

Last LPSN update 2026-05-29 08:25:24

Domain Bacteria

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Arcobacteraceae

Genus Arcobacter

Species Arcobacter nitrofigilis

Full scientific name Arcobacter nitrofigilis (McClung et al. 1983) Vandamme et al. 1991

Synonyms (1)

Campylobacter nitrofigilis

BacDive ID	Other strains from **Arcobacter nitrofigilis** (1)	Type strain
142357	A. nitrofigilis CCUG 12022, LMG 7547

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
121311	negative	rod-shaped
125438	negative		96.977
125439	negative		90.442

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Incubation period
3103	gamma	0	1-2 days
46369			3 days
121311		0

Multimedia

@ref:	66793
multimedia content:	EM_DSM_7299_1.jpg
multimedia.multimedia content:	EM_DSM_7299_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3103	VIBRIO NATRIEGENS MEDIUM (DSMZ Medium 115)	Medium recipe at MediaDive	Name: VIBRIO NATRIEGENS MEDIUM (DSMZ Medium 115) Composition: NaCl 15.0 g/l Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
3103	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
38144	MEDIUM 25 - for Arcobacter nitrofigilis		Distilled water make up to (1000.000 ml);Sodium chloride (15.000 g);Magnesium chloride hexahydrate (1.000 g);Agar (15.000 g);Yeast extract (5.000 g);Horse blood(50.000 ml);Succinic acid (2.000 g);Beef extract (5.000 g);Sodium glutamate (2.000 g);Special p
121311	CIP Medium 25	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
3103	positive	growth	25
38144	positive	growth	37
46369	positive	growth	25
67770	positive	growth	28
121311	positive	growth	22
121311	negative	growth	10
121311	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
3103	microaerophile
46369	microaerophile
125439	facultative anaerobe	94.887

Spore formation

@ref	Spore formation	Confidence
125438		90.559
125439		96.283

Halophily

@ref	Salt	Growth	Tested relation	Concentration
121311	NaCl	positive	growth	2 %
121311	NaCl		growth	4 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68373	17634 ChEBI	D-glucose	-	assimilation	from API CAM
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68373	606565 ChEBI	hippurate	-	hydrolysis	from API CAM
121311	606565 ChEBI	hippurate	-	hydrolysis
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
121311	17632 ChEBI	nitrate	+	reduction
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
121311	16301 ChEBI	nitrite	-	reduction
121311	132112 ChEBI	sodium thiosulfate	-	builds gas from
68373	30031 ChEBI	succinate	+	assimilation	from API CAM
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.
68373	474053	cefazolin	224 µg	from API CAM
68373	48923	erythromycin	14 µg	from API CAM
68373	100147	nalidixic acid	84 µg	from API CAM

Metabolite production

@ref	Chebi-ID	Metabolite
68373	16136 ChEBI	hydrogen sulfide	from API CAM
121311	35581 ChEBI	indole
68369	35581 ChEBI	indole	from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
3103	catalase	+	1.11.1.6
121311	catalase	+	1.11.1.6
68373	catalase	+	1.11.1.6	from API CAM
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
3103	cytochrome-c oxidase	+	1.9.3.1
121311	DNase	-
68373	gamma-glutamyltransferase	-	2.3.2.2	from API CAM
121311	gelatinase	-
68369	gelatinase	-		from API 20NE
68373	L-arginine arylamidase	-		from API CAM
68373	L-aspartate arylamidase	-	3.4.11.21	from API CAM
121311	lecithinase	-
121311	oxidase	+
68373	pyrrolidonyl arylamidase	-	3.4.19.3	from API CAM
121311	urease	+	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	suberin monomers biosynthesis	100	2 of 2
66794	cyanate degradation	100	3 of 3
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	sulfopterin metabolism	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	hydrogen production	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ceramide biosynthesis	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	ethanol fermentation	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	tetrahydrofolate metabolism	100	14 of 14
66794	folate polyglutamylation	100	1 of 1
66794	threonine metabolism	100	10 of 10
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	isoleucine metabolism	100	8 of 8
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	glutathione metabolism	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	1,4-dihydroxy-6-naphthoate biosynthesis	83.33	5 of 6
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	cellulose degradation	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	alanine metabolism	79.31	23 of 29
66794	photosynthesis	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	NAD metabolism	77.78	14 of 18
66794	nitrate assimilation	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	proline metabolism	72.73	8 of 11
66794	pentose phosphate pathway	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	lipid metabolism	70.97	22 of 31
66794	vitamin B12 metabolism	70.59	24 of 34
66794	purine metabolism	70.21	66 of 94
66794	urea cycle	69.23	9 of 13
66794	vitamin B1 metabolism	69.23	9 of 13
66794	sulfate reduction	69.23	9 of 13
66794	leucine metabolism	69.23	9 of 13
66794	pyrimidine metabolism	68.89	31 of 45
66794	cysteine metabolism	66.67	12 of 18
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	formaldehyde oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	glycolysis	64.71	11 of 17
66794	citric acid cycle	64.29	9 of 14
66794	oxidative phosphorylation	63.74	58 of 91
66794	vitamin B6 metabolism	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	histidine metabolism	62.07	18 of 29
66794	methionine metabolism	61.54	16 of 26
66794	glycine betaine biosynthesis	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	lipoate biosynthesis	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	arginine metabolism	58.33	14 of 24
66794	non-pathway related	57.89	22 of 38
66794	propanol degradation	57.14	4 of 7
66794	polyamine pathway	56.52	13 of 23
66794	d-mannose degradation	55.56	5 of 9
66794	lysine metabolism	54.76	23 of 42
66794	tryptophan metabolism	52.63	20 of 38
66794	glycine metabolism	50	5 of 10
66794	ribulose monophosphate pathway	50	1 of 2
66794	kanosamine biosynthesis II	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	coenzyme M biosynthesis	50	5 of 10
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	denitrification	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	tyrosine metabolism	42.86	6 of 14
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	creatinine degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	starch degradation	40	4 of 10
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	phenol degradation	40	8 of 20
66794	degradation of pentoses	39.29	11 of 28
66794	degradation of hexoses	38.89	7 of 18
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	chlorophyll metabolism	33.33	6 of 18
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	pantothenate biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	degradation of sugar acids	32	8 of 25
66794	ascorbate metabolism	31.82	7 of 22
66794	degradation of sugar alcohols	31.25	5 of 16
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	d-xylose degradation	27.27	3 of 11
66794	metabolism of disaccharids	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	alginate biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	arachidonic acid metabolism	22.22	4 of 18

Fatty acid profile

Metadata FA analysis

@ref

46369

Fatty acid	Percentage	ECL
C16:0	31.5	16
C16:1 ω7c	31.5	15.819
C18:1 ω7c /12t/9t	18.2	17.824
C12:0	6.4	12
C14:0	3.3	14
C12:0 3OH	2.7	13.455
C14:0 3OH/C16:1 ISO I	2.3	15.485
C12:0 ALDE ?	1.2	10.915
C18:2 ω6,9c/C18:0 ANTE	0.7	17.724
Unidentified	0.6
C18:0	0.6	18
unknown 12.486	0.5	12.486
C13:0 ISO 2OH	0.4	13.814

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
3103	+	-	-	-	-	-	-	-	+	+/-	+/-	+/-	+/-	+	-	-	+	+	-	-	+

API CAM

@ref	URE	Reduction of nitrateNIT	EsteraseEST	HIP	GGT	TTC	PYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	PAL	H2S productionH2S	GLU	SUT	NAL	CFZ	ACE	PROP	MLT	CIT	Erythromycin resistance (+) sensitivity (-)ERO	CAT
46369	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	+
3103	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+
3103	-	+	+	-	-	+	-	-	-	+	-	-	+	-	-	+	+	-	-	-	not determinedn.d.
3103	+	+	+	-	-	+	-	-	-	+	-	-	+	-	-	-	+/-	-	-	-	+
3103	-	+	+	-	-	+	-	-	-	+	-	-	+	-	-	+/-	+	-	+/-	-	not determinedn.d.

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121311	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Wetland (Swamp)
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
3103	roots of Spartina alterniflora (marshland)	Spartina alterniflora	Nova Scotia	Canada	CAN	North America
46369	Roots of short Spartina alterniflora		Halifax,Nova Scotia	Canada	CAN	North America
67770	Roots of short Spartina. alternijlora	Spartina. alternijlora	Halifax, Nova Scotia	Canada	CAN	North America
121311	Plant, Roots, Spartina alterniflora			Canada	CAN	North America	1984

Taxonmaps

69479

Global distribution of 16S sequence L14627 (>99% sequence identity) for Arcobacter nitrofigilis subclade from Microbeatlas

Aquatic Samples	11
Soil Samples	0
Animal Samples	1
Plant Samples	0
Total Samples	12

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3103	1	Risk group (German classification) According to TRBA 466
121311	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM9224v1 assembly for Arcobacter nitrofigilis DSM 7299	complete	GCA_000092245	572480.3	646564506	572480	95.81

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
3103	Arcobacter nitrofigilis 16S ribosomal RNA	L14627	1461		28199

GC content

@ref	GC-content (mol%)	Method
3103	29.0	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM9224v1 assembly for Arcobacter nitrofigilis DSM 7299
BV-BRC: 572480.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	94.89	no
125439	gram_stain	BacteriaNetⓘ	negative	90.44	no
125439	motility	BacteriaNetⓘ	yes	49.06	no
125439	spore_formation	BacteriaNetⓘ	no	96.28	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Arcobacter nitrofigilis DSM 7299 DSM 7299
NCBI: GCA_000092245.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.98	no
125438	anaerobic	anaerobicⓘ	no	69.27	yes
125438	aerobic	aerobicⓘ	no	58.61	yes
125438	spore-forming	spore-formingⓘ	no	90.56	no
125438	thermophilic	thermophileⓘ	no	91.72	yes
125438	flagellated	motile2+ⓘ	yes	80.04	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Exploring diazotrophic diversity: unveiling Nif core distribution and evolutionary patterns in nitrogen-fixing organisms.	Nichio BTL, Chaves RBR, Pedrosa FO, Raittz RT.	BMC Genomics	10.1186/s12864-024-10994-9	2025
	Diagnostic approach for detection and identification of emerging enteric pathogens revisited: the (Ali)arcobacter lanthieri case.	Kerkhof PJ, Van den Abeele AM, Strubbe B, Vogelaers D, Vandamme P, Houf K.	New Microbes New Infect	10.1016/j.nmni.2020.100829	2021
	Evolutionary Principles of Bacterial Signaling Capacity and Complexity.	Mo R, Liu Y, Chen Y, Mao Y, Gao B.	mBio	10.1128/mbio.00764-22	2022
	Sensitivity of the mangrove-estuarine microbial community to aquaculture effluent.	Erazo NG, Bowman JS.	iScience	10.1016/j.isci.2021.102204	2021
Genetics	Identification and specificity validation of unique and antimicrobial resistance genes to trace suspected pathogenic AMR bacteria and to monitor the development of AMR in non-AMR strains in the environment and clinical settings.	Rekadwad BN, Pramod N, Rao MPN, Hashem A, Avila-Quezada GD, Abd Allah EF.	Saudi J Biol Sci	10.1016/j.sjbs.2023.103869	2023
	Complete genome sequence of Arcobacter nitrofigilis type strain (CI).	Pati A, Gronow S, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Chertkov O, Bruce D, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Detter JC, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC.	Stand Genomic Sci	10.4056/sigs.912121	2010
	Regulation of Respiratory Pathways in Campylobacterota: A Review.	van der Stel AX, Wosten MMSM.	Front Microbiol	10.3389/fmicb.2019.01719	2019
Enzymology	DddY, a periplasmic dimethylsulfoniopropionate lyase found in taxonomically diverse species of Proteobacteria.	Curson AR, Sullivan MJ, Todd JD, Johnston AW.	ISME J	10.1038/ismej.2010.203	2011
Metabolism	The Ruegeria pomeroyi acuI gene has a role in DMSP catabolism and resembles yhdH of E. coli and other bacteria in conferring resistance to acrylate.	Todd JD, Curson AR, Sullivan MJ, Kirkwood M, Johnston AW.	PLoS One	10.1371/journal.pone.0035947	2012
	Presence and analysis of plasmids in human and animal associated arcobacter species.	Douidah L, De Zutter L, Van Nieuwerburgh F, Deforce D, Ingmer H, Vandenberg O, Van den Abeele AM, Houf K.	PLoS One	10.1371/journal.pone.0085487	2014
Genetics	Genomic evidence for the emergence and evolution of pathogenicity and niche preferences in the genus Campylobacter.	Iraola G, Perez R, Naya H, Paolicchi F, Pastor E, Valenzuela S, Calleros L, Velilla A, Hernandez M, Morsella C.	Genome Biol Evol	10.1093/gbe/evu195	2014
Genetics	Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample.	Luo C, Tsementzi D, Kyrpides N, Read T, Konstantinidis KT.	PLoS One	10.1371/journal.pone.0030087	2012
Pathogenicity	Natural hot spots for gain of multiple resistances: arsenic and antibiotic resistances in heterotrophic, aerobic bacteria from marine hydrothermal vent fields.	Farias P, Espirito Santo C, Branco R, Francisco R, Santos S, Hansen L, Sorensen S, Morais PV.	Appl Environ Microbiol	10.1128/aem.03240-14	2015
	Veillonella, Firmicutes: Microbes disguised as Gram negatives.	Vesth T, Ozen A, Andersen SC, Kaas RS, Lukjancenko O, Bohlin J, Nookaew I, Wassenaar TM, Ussery DW.	Stand Genomic Sci	10.4056/sigs.2981345	2013
Metabolism	The functional potential of microbial communities in hydraulic fracturing source water and produced water from natural gas extraction characterized by metagenomic sequencing.	Mohan AM, Bibby KJ, Lipus D, Hammack RW, Gregory KB.	PLoS One	10.1371/journal.pone.0107682	2014
	Detection, identification and quantification of Campylobacter jejuni, coli and lari in food matrices all at once using multiplex qPCR.	Vondrakova L, Pazlarova J, Demnerova K.	Gut Pathog	10.1186/1757-4749-6-12	2014
Genetics	MP3: a software tool for the prediction of pathogenic proteins in genomic and metagenomic data.	Gupta A, Kapil R, Dhakan DB, Sharma VK.	PLoS One	10.1371/journal.pone.0093907	2014
	A Polyphasic and Taxogenomic Evaluation Uncovers Arcobacter cryaerophilus as a Species Complex That Embraces Four Genomovars.	Perez-Cataluna A, Collado L, Salgado O, Lefinanco V, Figueras MJ.	Front Microbiol	10.3389/fmicb.2018.00805	2018
Metabolism	Helical shape of Helicobacter pylori requires an atypical glutamine as a zinc ligand in the carboxypeptidase Csd4.	Chan AC, Blair KM, Liu Y, Frirdich E, Gaynor EC, Tanner ME, Salama NR, Murphy ME.	J Biol Chem	10.1074/jbc.m114.624734	2015
Enzymology	Evidence for conserved function of gamma-glutamyltranspeptidase in Helicobacter genus.	Rossi M, Bolz C, Revez J, Javed S, El-Najjar N, Anderl F, Hyytiainen H, Vuorela P, Gerhard M, Hanninen ML.	PLoS One	10.1371/journal.pone.0030543	2012
	Giant hydrogen sulfide plume in the oxygen minimum zone off Peru supports chemolithoautotrophy.	Schunck H, Lavik G, Desai DK, Grosskopf T, Kalvelage T, Loscher CR, Paulmier A, Contreras S, Siegel H, Holtappels M, Rosenstiel P, Schilhabel MB, Graco M, Schmitz RA, Kuypers MM, Laroche J.	PLoS One	10.1371/journal.pone.0068661	2013
	Development and testing of a DNA macroarray to assess nitrogenase (nifH) gene diversity.	Steward GF, Jenkins BD, Ward BB, Zehr JP.	Appl Environ Microbiol	10.1128/aem.70.3.1455-1465.2004	2004
	The novel regulatory ncRNA, NfiS, optimizes nitrogen fixation via base pairing with the nitrogenase gene nifK mRNA in Pseudomonas stutzeri A1501.	Zhan Y, Yan Y, Deng Z, Chen M, Lu W, Lu C, Shang L, Yang Z, Zhang W, Wang W, Li Y, Ke Q, Lu J, Xu Y, Zhang L, Xie Z, Cheng Q, Elmerich C, Lin M.	Proc Natl Acad Sci U S A	10.1073/pnas.1604514113	2016
Metabolism	Computational comparative study of tuberculosis proteomes using a model learned from signal peptide structures.	Lai JS, Cheng CW, Sung TY, Hsu WL.	PLoS One	10.1371/journal.pone.0035018	2012
Enzymology	Xer recombinase and genome integrity in Helicobacter pylori, a pathogen without topoisomerase IV.	Debowski AW, Carnoy C, Verbrugghe P, Nilsson HO, Gauntlett JC, Fulurija A, Camilleri T, Berg DE, Marshall BJ, Benghezal M.	PLoS One	10.1371/journal.pone.0033310	2012
Enzymology	Comparison of vertical distributions of prokaryotic assemblages in the anoxic Cariaco Basin and Black Sea by use of fluorescence in situ hybridization.	Lin X, Wakeham SG, Putnam IF, Astor YM, Scranton MI, Chistoserdov AY, Taylor GT.	Appl Environ Microbiol	10.1128/aem.72.4.2679-2690.2006	2006
Enzymology	Real-time quantitative PCR assay development and application for assessment of agricultural surface water and various fecal matter for prevalence of Aliarcobacter faecis and Aliarcobacter lanthieri.	Miltenburg MG, Cloutier M, Craiovan E, Lapen DR, Wilkes G, Topp E, Khan IUH.	BMC Microbiol	10.1186/s12866-020-01826-3	2020
Phylogeny	Identification of thermotolerant campylobacter species by fluorescence in situ hybridization.	Poppert S, Haas M, Yildiz T, Alter T, Bartel E, Fricke U, Essig A.	J Clin Microbiol	10.1128/jcm.01512-07	2008
	Analysis of nitrogen-fixing members of the epsilon subclass of Proteobacteria in salt marsh sediments.	Welsh A, Burke DJ, Hahn D.	Appl Environ Microbiol	10.1128/aem.00757-07	2007
Phylogeny	Identification of Campylobacter jejuni, C. coli, C. lari, C. upsaliensis, arcobacter butzleri, and A. butzleri-like species based on the glyA gene.	Al Rashid ST, Dakuna I, Louie H, Ng D, Vandamme P, Johnson W, Chan VL.	J Clin Microbiol	10.1128/jcm.38.4.1488-1494.2000	2000
	Arcobacter-specific and Arcobacter butzleri-specific 16S rRNA-based DNA probes.	Wesley IV, Schroeder-Tucker L, Baetz AL, Dewhirst FE, Paster BJ.	J Clin Microbiol	10.1128/jcm.33.7.1691-1698.1995	1995
Phylogeny	Differentiation of Campylobacter coli, Campylobacter jejuni, Campylobacter lari, and Campylobacter upsaliensis by a multiplex PCR developed from the nucleotide sequence of the lipid A gene lpxA.	Klena JD, Parker CT, Knibb K, Ibbitt JC, Devane PM, Horn ST, Miller WG, Konkel ME.	J Clin Microbiol	10.1128/jcm.42.12.5549-5557.2004	2004
Phylogeny	Genotypic and phenotypic characterization of Helicobacter cinaedi and Helicobacter fennelliae strains isolated from humans and animals.	Kiehlbauch JA, Brenner DJ, Cameron DN, Steigerwalt AG, Makowski JM, Baker CN, Patton CM, Wachsmuth IK.	J Clin Microbiol	10.1128/jcm.33.11.2940-2947.1995	1995
Metabolism	Isolation and characterization of strains CVO and FWKO B, two novel nitrate-reducing, sulfide-oxidizing bacteria isolated from oil field brine.	Gevertz D, Telang AJ, Voordouw G, Jenneman GE.	Appl Environ Microbiol	10.1128/aem.66.6.2491-2501.2000	2000
Phylogeny	Reproducibility of tolerance tests that are useful in the identification of campylobacteria.	On SL, Holmes B.	J Clin Microbiol	10.1128/jcm.29.9.1785-1788.1991	1991
Phylogeny	Development of a real-time fluorescence resonance energy transfer PCR to detect arcobacter species.	Abdelbaqi K, Buissonniere A, Prouzet-Mauleon V, Gresser J, Wesley I, Megraud F, Menard A.	J Clin Microbiol	10.1128/jcm.00256-07	2007
Phylogeny	Arcobacter iocasae sp. nov., a bacterium isolated from the gill homogenate of the mussel Gigantidas platifrons in a cold seep.	Zhang H, Jin S, Wang H, Li F, Zhong Z, Guo Y, Luo J, Ye Z, Lian C, Wang M, Li C.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006818	2025

References

#3103	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7299
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#38144	; Curators of the CIP;
#46369	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15893
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68373	Automatically annotated from API CAM .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121311	Collection of Institut Pasteur ; Curators of the CIP; CIP 103745
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Arcobacter nitrofigilis (CCUG 15892, CECT 7204, DSM 7299)

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