Polynucleobacter cosmopolitanus (DSM 21490, CIP 109840, LMG 25212)

Name: Polynucleobacter cosmopolitanus (DSM 21490, CIP 109840, LMG 25212)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2076

Type strain

Strain Designation MWH-MoIso2

Culture col. no. DSM 21490 CIP 109840 LMG 25212 MWH-MoIso2

NCBI tax ID(s) 351345

Special Collections DSMZ CIP Literature strains

Links

Polynucleobacter cosmopolitanus MWH-MoIso2 is an aerobe, chemoorganotroph, mesophilic prokaryote that forms circular colonies and was isolated from lake water.

rod-shaped colony-forming aerobe chemoorganotroph mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 366455

CIP 109840,DSM 21490,LMG 25212

@ref 20215

Last LPSN update 2025-12-16 09:47:15

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Polynucleobacter

Species Polynucleobacter cosmopolitanus

Full scientific name Polynucleobacter cosmopolitanus Hahn et al. 2010

BacDive ID	Other strains from **Polynucleobacter cosmopolitanus** (7)	Type strain
2073	P. cosmopolitanus MwH-TaW3, DSM 21487
2074	P. cosmopolitanus MWH-NZ8W13, DSM 21488
2075	P. cosmopolitanus MWH-NZ8W4, DSM 21489
2077	P. cosmopolitanus MWH-MoNR1, DSM 21491
2078	P. cosmopolitanus MWH-CaK1, DSM 21494
161836	P. cosmopolitanus JCM 16612
161847	P. cosmopolitanus JCM 16656

Morphology

Cell morphology

@ref	Cell length	Cell width	Cell shape	Gram stain	Confidence
23163	0.5-1.4 µm	0.3-0.5 µm	rod-shaped
118763			rod-shaped	negative
125439				negative	99.9

Colony morphology

@ref	Colony size	Colony shape	Incubation period	Medium used
23163	1 mm	circular	5-10 days	NSY agar

Pigmentation

23163

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
15741	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
23163	NSY agar
33329	MEDIUM 706- for Polynucleobacter
118763	CIP Medium 706	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
15741	positive	growth	28	mesophilic
23163	positive	growth	10-35
23163	positive	maximum	35	mesophilic
23163	positive	minimum	5	psychrophilic
33329	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
23163	aerobe
125439	obligate aerobe	98.6

Nutrition type

23163

Typechemoorganotroph

Spore formation

@ref	Spore formation	Confidence
125439		99.9

Halophily

@ref	Salt	Growth	Tested relation	Concentration
23163	NaCl	positive	growth	0 %
23163	NaCl	positive	maximum	0.3-0.5 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23163	39150 ChEBI	4-oxopentanoate	+	growth
23163	30089 ChEBI	acetate	+	carbon source
23163	17750 ChEBI	betaine	-	carbon source
23163	17750 ChEBI	betaine	-	growth
23163	16947 ChEBI	citrate	-	growth
23163	15824 ChEBI	D-fructose	-	carbon source
23163	15824 ChEBI	D-fructose	-	growth
23163	28847 ChEBI	D-fucose	-	carbon source
23163	28847 ChEBI	D-fucose	-	growth
23163	12936 ChEBI	D-galactose	+	carbon source
23163	12936 ChEBI	D-galactose	+	growth
23163	18024 ChEBI	D-galacturonic acid	+	carbon source
23163	18024 ChEBI	D-galacturonic acid	+	growth
23163	17634 ChEBI	D-glucose	-	growth
23163	62318 ChEBI	D-lyxose	-	carbon source
23163	62318 ChEBI	D-lyxose	-	growth
23163	16024 ChEBI	D-mannose	-	growth
23163	17924 ChEBI	D-sorbitol	-	carbon source
23163	17924 ChEBI	D-sorbitol	-	growth
23163	15740 ChEBI	formate	-	carbon source
23163	15740 ChEBI	formate	-	growth
23163	29806 ChEBI	fumarate	+	carbon source
23163	29806 ChEBI	fumarate	+	growth
23163	29805 ChEBI	glycolate	-	carbon source
23163	36655 ChEBI	glyoxylate	-	growth
23163	16977 ChEBI	L-alanine	+	carbon source
23163	16977 ChEBI	L-alanine	+	growth
23163	17196 ChEBI	L-asparagine	-	carbon source
23163	17196 ChEBI	L-asparagine	-	growth
23163	29991 ChEBI	L-aspartate	-	carbon source
23163	29991 ChEBI	L-aspartate	-	growth
23163	17561 ChEBI	L-cysteine	+	carbon source
23163	17561 ChEBI	L-cysteine	+	growth
23163	29985 ChEBI	L-glutamate	-	growth
23163	17115 ChEBI	L-serine	-	carbon source
23163	25115 ChEBI	malate	+	carbon source
23163	25115 ChEBI	malate	+	growth
23163	15792 ChEBI	malonate	-	growth
118763	17632 ChEBI	nitrate	-	reduction
118763	16301 ChEBI	nitrite	-	reduction
23163	30623 ChEBI	oxalate	-	carbon source
23163	16452 ChEBI	oxaloacetate	+	carbon source
23163	16452 ChEBI	oxaloacetate	+	growth
23163	17272 ChEBI	propionate	+	carbon source
23163	17272 ChEBI	propionate	+	growth
23163	15361 ChEBI	pyruvate	+	carbon source
23163	30031 ChEBI	succinate	+	carbon source
23163	16094 ChEBI	thiosulfate	+	growth
23163	16199 ChEBI	urea	+	growth

Metabolite production

@ref	Chebi-ID	Metabolite	Production
118763	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
118763	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118763	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
118763	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118763	-	-	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15741	lake water	Lake Mondsee	Austria	AUT	Europe
23163	water column (pelagic zone)
118763	Environment, Water, lake	Mondsee	Austria	AUT	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15741	1	Risk group (German classification) According to TRBA 466
118763	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Polynucleobacter cosmopolitanus MWH-MoIso2	complete			2642422582	351345	98.76
66792	ASM222422v1 assembly for Polynucleobacter cosmopolitanus MWH-MoIso2	contig	GCA_002224225	351345.3	2773857926	351345	67.62

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15741	Polynucleobacter cosmopolitanus partial 16S rRNA gene and ITS1, strain MWH-MoIso2	AJ550672	2016		351345

GC content

@ref	GC-content (mol%)	Method
15741	44.9
23163	44.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Polynucleobacter cosmopolitanus MWH-MoIso2
IMG: 2773857926

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.90	no
125439	motility	BacteriaNetⓘ	yes	80.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of a Polynucleobacter cosmopolitanus strain isolated from tropical Lake Victoria as Polynucleobacter victoriensis sp. nov.	Hahn MW, Schmidt J, Asiyo GS, Kyrpides NC, Woyke T, Whitman WB	Int J Syst Evol Microbiol	10.1099/ijsem.0.002421	2017
Phylogeny	Polynucleobacter cosmopolitanus sp. nov., free-living planktonic bacteria inhabiting freshwater lakes and rivers.	Hahn MW, Lang E, Brandt U, Lunsdorf H, Wu QL, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.010595-0	2009

References

#15741	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21490
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23163	Martin W. Hahn, Elke Lang, Ulrike Brandt, Heinrich Lünsdorf, Qinglong L. Wu, Erko Stackebrandt: Polynucleobacter cosmopolitanus sp. nov., free-living planktonic bacteria inhabiting freshwater lakes and rivers. IJSEM 60: 166 - 173 2010 ( DOI 10.1099/ijs.0.010595-0 , PubMed 19648339 )
#33329	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#118763	Collection of Institut Pasteur ; Curators of the CIP; CIP 109840
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Polynucleobacter cosmopolitanus (DSM 21490, CIP 109840, LMG 25212)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002224225

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media