Name: Pandoraea faecigallinarum KOx
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2062

Type strain:

Species: Pandoraea faecigallinarum

Strain Designation: KOx

Culture col. no.: DSM 23572, CCM 2766, NBRC 106092

Strain history: <- N. Sahin, Mugla University, Kötekli; KOx <- T. S. Chandra

NCBI tax ID(s): 656179 (species)

SI-ID 66666

CCM 2766, DSM 23572, NBRC 106092, LMG 28171

Section

Pandoraea faecigallinarum KOx is an aerobe, thermophilic, Gram-negative bacterium that was isolated from chicken dung.

Gram-negative
motile
rod-shaped
aerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Pandoraea*
	Species	**Pandoraea faecigallinarum**
	Full Scientific Name (LPSN)	Pandoraea faecigallinarum Sahin et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #23368]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.99

[Ref.: #23368]	Cell length	1.5 µm

[Ref.: #23368]	Cell width	0.7 µm

[Ref.: #23368]	Cell shape	rod-shaped

[Ref.: #23368]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %94.617

[Ref.: #23368]	Colony size	1-2 mm
[Ref.: #23368]	Colony color	cream
[Ref.: #23368]	Incubation period	2 days
[Ref.: #23368]	Cultivation medium used	TSA

[Ref.: #17292]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23368]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #23368]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #23368]			growth	42 °C

[Ref.: #23368]

Temperature range

thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23368]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23368]		NaCl	no	growth	3	%(w/v)
[Ref.: #23368]		NaCl	no	growth	4.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23368]	2-hydroxybutyrate ChEBI	+	respiration
[Ref.: #23368]	2-oxobutanoate ChEBI	+	respiration
[Ref.: #23368]	2-oxopentanoate ChEBI	+	respiration
[Ref.: #23368]	3-hydroxybutyrate ChEBI	+	respiration
[Ref.: #23368]	4-hydroxybutyrate ChEBI	+	respiration
[Ref.: #23368]	acetate ChEBI	+	respiration
[Ref.: #23368]	adipate ChEBI	-	carbon source
[Ref.: #23368]	alpha-D-glucose ChEBI	-	respiration
[Ref.: #23368]	bromosuccinate ChEBI	+	respiration
[Ref.: #23368]	cellobiose ChEBI	-	respiration
[Ref.: #23368]	cis-aconitate ChEBI	+	respiration
[Ref.: #23368]	citrate ChEBI	+	carbon source
[Ref.: #23368]	citrate ChEBI	+	respiration
[Ref.: #23368]	D-gluconate ChEBI	+	respiration
[Ref.: #23368]	D-glucosaminic acid ChEBI	-	respiration
[Ref.: #23368]	D-glucose 6-phosphate ChEBI	+	respiration
[Ref.: #23368]	D-serine ChEBI	+	respiration
[Ref.: #23368]	decanoate ChEBI	+	carbon source
[Ref.: #23368]	formate ChEBI	+	respiration
[Ref.: #23368]	gluconate ChEBI	+	carbon source
[Ref.: #23368]	glucose ChEBI	-	carbon source
[Ref.: #23368]	glucuronamide ChEBI	-	respiration
[Ref.: #23368]	glycerol ChEBI	-	respiration
[Ref.: #23368]	glycogen ChEBI	+	respiration
[Ref.: #23368]	glycyl L-aspartic acid ChEBI	-	respiration
[Ref.: #23368]	glycyl-l-glutamate ChEBI	+	respiration
[Ref.: #23368]	L-alaninamide ChEBI	+	respiration
[Ref.: #23368]	L-alanylglycine ChEBI	+	respiration
[Ref.: #23368]	L-arabinose ChEBI	-	respiration
[Ref.: #23368]	L-asparagine ChEBI	+	respiration
[Ref.: #23368]	L-glutamate ChEBI	+	respiration
[Ref.: #23368]	L-histidine ChEBI	+	respiration
[Ref.: #23368]	L-leucine ChEBI	+	respiration
[Ref.: #23368]	L-phenylalanine ChEBI	+	respiration
[Ref.: #23368]	L-proline ChEBI	+	respiration
[Ref.: #23368]	L-pyroglutamic acid ChEBI	+	respiration
[Ref.: #23368]	L-serine ChEBI	+	respiration
[Ref.: #23368]	L-threonine ChEBI	+	respiration
[Ref.: #23368]	lactate ChEBI	+	respiration
[Ref.: #23368]	malate ChEBI	+	carbon source
[Ref.: #23368]	malonate ChEBI	-	respiration
[Ref.: #23368]	methyl pyruvate ChEBI	+	respiration
[Ref.: #23368]	phenylacetate ChEBI	+	carbon source
[Ref.: #23368]	sebacic acid ChEBI	-	respiration
[Ref.: #23368]	sucrose ChEBI	+	respiration
[Ref.: #23368]	tween 80 ChEBI	-	respiration
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic resistance	Concentration
[Ref.: #23368]		tetracycline ChEBI	no	30	µg

	Enzyme	Enzyme activity	EC number
[Ref.: #23368]	acid phosphatase	+	3.1.3.2
[Ref.: #23368]	alkaline phosphatase	+	3.1.3.1
[Ref.: #23368]	cystine arylamidase	-	3.4.11.3
[Ref.: #23368]	esterase (C 4)	+
[Ref.: #23368]	esterase lipase (C 8)	+
[Ref.: #23368]	leucine arylamidase	+	3.4.11.1
[Ref.: #23368]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #23368]	nitrate reductase	-	1.7.99.4
[Ref.: #23368]	urease	-	3.5.1.5
[Ref.: #23368]	valine arylamidase	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17292]	Sample type/isolated from	chicken dung
[Ref.: #17292]	Country	India
[Ref.: #17292]	Country ISO 3 Code	IND
[Ref.: #17292]	Continent	Asia

[Ref.: #23368]	Sample type/isolated from	chicken dung after enrichment with oxalate in mineral medium
* marker position based on {}

Isolation sources categories

#Host	#Birds	#Chicken
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB510957 (>99% sequence identity) for Pandoraea from Microbeatlas

Aquatic Samples	4192
Soil Samples	6943
Animal Samples	3605
Plant Samples	5843
Total Samples	20583

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17292]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17292]	Pandoraea faecigallinarum gene for 16S rRNA, partial sequence, strain: KOx	AB510957	1376	ENA	656179 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pandoraea faecigallinarum DSM 23572	GCA_001029105	complete	GenBank	656179 tax ID	*
[Ref.: #66792]	Pandoraea faecigallinarum strain DSM 23572	656179.3	complete	PATRIC	656179 tax ID	*
[Ref.: #66792]	Pandoraea faecigallinarum strain DSM 23572	656179.7	plasmid	PATRIC	656179 tax ID	*
[Ref.: #66792]	Pandoraea faecigallinarum strain DSM 23572	656179.8	plasmid	PATRIC	656179 tax ID	*
[Ref.: #66792]	Pandoraea faecigallinarum DSM 23572	2654588016	complete	JGI IMG/M	656179 tax ID	*

[Ref.: #17292]	GC-content	62.3 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #23368]	GC-content	62.3 mol%	Thermal denaturation, fluorometry

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pandoraea faecigallinarum DSM 23572 NCBI: GCA_001029105.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pandoraea faecigallinarum DSM 23572 NCBI: GCA_001029105.1
[Ref.: #69480]	motile	yes	89.907	yes
[Ref.: #69480]	flagellated	no	66.278	no
[Ref.: #69480]	gram-positive	no	98.875	yes
[Ref.: #69480]	anaerobic	no	98.698	no
[Ref.: #69480]	aerobic	yes	87.854	no
[Ref.: #69480]	halophile	no	93.991	no
[Ref.: #69480]	spore-forming	no	95.036	no
[Ref.: #69480]	glucose-util	yes	61.782	yes
[Ref.: #69480]	thermophile	no	98.126	no
[Ref.: #69480]	glucose-ferment	no	90.074	no
[Ref.: #69480]	motile	yes	89.907	yes
[Ref.: #69480]	flagellated	no	66.278	no
[Ref.: #69480]	gram-positive	no	98.875	yes
[Ref.: #69480]	anaerobic	no	98.698	no
[Ref.: #69480]	aerobic	yes	87.854	no
[Ref.: #69480]	halophile	no	93.991	no
[Ref.: #69480]	spore-forming	no	95.036	no
[Ref.: #69480]	glucose-util	yes	61.782	yes
[Ref.: #69480]	thermophile	no	98.126	no
[Ref.: #69480]	glucose-ferment	no	90.074	no
[Ref.: #69480]	motile	yes	89.907	yes
[Ref.: #69480]	flagellated	no	66.278	no
[Ref.: #69480]	gram-positive	no	98.875	yes
[Ref.: #69480]	anaerobic	no	98.698	no
[Ref.: #69480]	aerobic	yes	87.854	no
[Ref.: #69480]	halophile	no	93.991	no
[Ref.: #69480]	spore-forming	no	95.036	no
[Ref.: #69480]	glucose-util	yes	61.782	yes
[Ref.: #69480]	thermophile	no	98.126	no
[Ref.: #69480]	glucose-ferment	no	90.074	no

Availability in culture collections External links

[Ref.: #17292]

Culture collection no.

DSM 23572, CCM 2766, NBRC 106092

[Ref.: #71709]

SI-ID 66666

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Pandoraea oxalativorans sp. nov., Pandoraea faecigallinarum sp. nov. and Pandoraea vervacti sp. nov., isolated from oxalate-enriched culture.	Sahin N, Tani A, Kotan R, Sedlacek I, Kimbara K, Tamer AU	Int J Syst Evol Microbiol	10.1099/ijs.0.026138-0	2010	*
	Characterization and Comparative Overview of Complete Sequences of the First Plasmids of Pandoraea across Clinical and Non-clinical Strains.	Yong D, Tee KK, Yin WF, Chan KG	Front Microbiol	10.3389/fmicb.2016.01606	2016	*

References

#17292

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23572

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23368

Nurettin Sahin, Akio Tani, Recep Kotan, Ivo Sedlácek, Kazuhide Kimbara, Abdurrahman U. Tamer: Pandoraea oxalativorans sp. nov., Pandoraea faecigallinarum sp. nov. and Pandoraea vervacti sp. nov., isolated from oxalate-enriched culture. IJSEM 61: 2247 - 2253 2011 ( DOI 10.1099/ijs.0.026138-0 , PubMed 20952546 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71709

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID66666.1 )

* These data were automatically processed and therefore are not curated

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Pandoraea faecigallinarum DSM 23572

Pandoraea faecigallinarum DSM 23572

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