Name: Pandoraea thiooxydans ATSB16
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2061

Type strain:

Species: Pandoraea thiooxydans

Strain Designation: ATSB16

Culture col. no.: DSM 25325, KACC 12757, LMG 24779, CIP 110207

Strain history: CIP <- 2010, KACC <- D. M. Sa, Nat. Chungbuk. Univ., Cheongju, Korea: strain ATSB16

NCBI tax ID(s): 445709 (species)

SI-ID 356279

LMG 24674, KACC 12757, LMG 24779, CIP 110207, DSM 25325

Special Collections

Section

Pandoraea thiooxydans ATSB16 is an aerobe, chemolithoautotroph, Gram-negative bacterium that was isolated from rhizosphere soils of sesame Sesamum indicum L..

Gram-negative
motile
rod-shaped
aerobe
chemolithoautotroph
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Pandoraea*
	Species	**Pandoraea thiooxydans**
	Full Scientific Name (LPSN)	Pandoraea thiooxydans Anandham et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #23162]	Gram stain	negative
[Ref.: #123526]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %97.994

[Ref.: #23162]	Cell length	1.2-4.5 µm

[Ref.: #23162]	Cell width	0.5-0.7 µm

[Ref.: #23162]	Cell shape	rod-shaped
[Ref.: #123526]	Cell shape	rod-shaped

[Ref.: #23162]	Motility	yes
[Ref.: #123526]	Motility	yes

[Ref.: #23162]	Colony color	white
[Ref.: #23162]	Colony shape	circular
[Ref.: #23162]	Incubation period	2 days
[Ref.: #23162]	Cultivation medium used	R2A

[Ref.: #18000]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18000]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #18000]

Culture medium growth

[Ref.: #18000]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18000]

Culture medium composition

expand / minimize

[Ref.: #23162]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #23162]

Culture medium growth

[Ref.: #42013]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #42013]

Culture medium growth

[Ref.: #42013]

Culture medium composition

expand / minimize

[Ref.: #123526]

Culture medium

CIP Medium 72

[Ref.: #123526]

Culture medium growth

[Ref.: #123526]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #123526]

Culture medium

CIP Medium 566

[Ref.: #123526]

Culture medium growth

[Ref.: #123526]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #18000]	growth	30 °C
[Ref.: #23162]	growth	4-42 °C
[Ref.: #23162]	optimum	30 °C
[Ref.: #42013]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #23162]			optimum	7.0
[Ref.: #23162]			growth	4.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23162]	Oxygen tolerance	aerobe
[Ref.: #123526]	Oxygen tolerance	obligate aerobe

[Ref.: #23162]

Nutrition type

chemolithoautotroph

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23162]		NaCl		growth	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23162]	2-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #23162]	3-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #23162]	3-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #23162]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #23162]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #23162]	adipate ChEBI	+	assimilation
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #23162]	beta-D-fucose ChEBI	+	assimilation
[Ref.: #23162]	D-glucose ChEBI	+	assimilation
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #23162]	D-mannitol ChEBI	+	assimilation
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #23162]	D-mannose ChEBI	+	assimilation
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #23162]	D-ribose ChEBI	-	assimilation
[Ref.: #23162]	D-sorbitol ChEBI	+	assimilation
[Ref.: #23162]	decanoate ChEBI	-	assimilation
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #23162]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #23162]	gelatin ChEBI	-	hydrolysis
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #23162]	glucose ChEBI	+	fermentation
[Ref.: #23162]	glycogen ChEBI	+	assimilation
[Ref.: #23162]	itaconate ChEBI	-	assimilation
[Ref.: #23162]	L-alanine ChEBI	+	assimilation
[Ref.: #23162]	L-arabinose ChEBI	-	assimilation
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #23162]	L-fucose ChEBI	+	assimilation
[Ref.: #23162]	L-proline ChEBI	+	assimilation
[Ref.: #23162]	L-rhamnose ChEBI	+	assimilation
[Ref.: #23162]	L-serine ChEBI	+	assimilation
[Ref.: #23162]	lactate ChEBI	+	assimilation
[Ref.: #23162]	malate ChEBI	+	assimilation
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #23162]	maltose ChEBI	+	assimilation
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #23162]	melibiose ChEBI	-	assimilation
[Ref.: #23162]	methylmalonic acid ChEBI	+	assimilation
[Ref.: #23162]	myo-inositol ChEBI	-	assimilation
[Ref.: #23162]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #23162]	nitrate ChEBI	+	reduction
[Ref.: #123526]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #123526]	nitrite ChEBI	-	reduction
[Ref.: #23162]	phenylacetate ChEBI	+	assimilation
[Ref.: #23162]	potassium gluconate ChEBI	+	assimilation
[Ref.: #23162]	propionate ChEBI	+	assimilation
[Ref.: #23162]	salicin ChEBI	-	assimilation
[Ref.: #23162]	sodium acetate ChEBI	+	assimilation
[Ref.: #23162]	suberic acid ChEBI	+	assimilation
[Ref.: #23162]	sucrose ChEBI	-	assimilation
[Ref.: #23162]	tryptophan ChEBI	-	energy source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #23162]	tween 80 ChEBI	+	hydrolysis
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #23162]	valerate ChEBI	+	assimilation
[Ref.: #23162]	yeast extract	-	required for growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #23162]	ampicillin ChEBI	yes
[Ref.: #23162]	chloramphenicol ChEBI	yes
[Ref.: #23162]	kanamycin ChEBI	yes
[Ref.: #23162]	nalidixic acid ChEBI		yes
[Ref.: #23162]	trimethoprim ChEBI	yes

	Metabolite	Production
[Ref.: #23162]	indole ChEBI	no
[Ref.: #123526]	indole ChEBI	no
[Ref.: #68369]	indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #23162]		indole ChEBI	-
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #23162]	acid phosphatase	-	3.1.3.2
[Ref.: #23162]	alkaline phosphatase	-	3.1.3.1
[Ref.: #23162]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #23162]	alpha-fucosidase	-	3.2.1.51
[Ref.: #23162]	alpha-galactosidase	-	3.2.1.22
[Ref.: #23162]	alpha-glucosidase	-	3.2.1.20
[Ref.: #23162]	alpha-mannosidase	-	3.2.1.24
[Ref.: #23162]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #23162]	beta-galactosidase	-	3.2.1.23
[Ref.: #23162]	beta-glucosidase	-	3.2.1.21
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #23162]	beta-glucuronidase	-	3.2.1.31
[Ref.: #23162]	catalase	-	1.11.1.6
[Ref.: #123526]	catalase	-	1.11.1.6
[Ref.: #23162]	cystine arylamidase	-	3.4.11.3
[Ref.: #23162]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #23162]	esterase (C 4)	+
[Ref.: #23162]	esterase lipase (C 8)	-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #23162]	leucine arylamidase	+	3.4.11.1
[Ref.: #23162]	lipase (C 14)	-
[Ref.: #23162]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #23162]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #123526]	oxidase	+
[Ref.: #23162]	trypsin	-	3.4.21.4
[Ref.: #23162]	tryptophan deaminase	-	4.1.99.1
[Ref.: #23162]	urease	+	3.5.1.5
[Ref.: #123526]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #23162]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #18000]	23893	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	hydrogen production	100	5 of 5
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	gallate degradation	100	5 of 5
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	ubiquinone biosynthesis	100	7 of 7
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	photosynthesis	92.86	13 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	92.86	13 of 14
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	proline metabolism	90.91	10 of 11
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	propionate fermentation	90	9 of 10
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	allantoin degradation	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	tryptophan metabolism	86.84	33 of 38
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	tyrosine metabolism	85.71	12 of 14
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	cysteine metabolism	83.33	15 of 18
[Ref.: #66794]	histidine metabolism	82.76	24 of 29
[Ref.: #66794]	vitamin B6 metabolism	81.82	9 of 11
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	purine metabolism	78.72	74 of 94
[Ref.: #66794]	glutathione metabolism	78.57	11 of 14
[Ref.: #66794]	glutamate and glutamine metabolism	78.57	22 of 28
[Ref.: #66794]	urea cycle	76.92	10 of 13
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	lactate fermentation	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	75	9 of 12
[Ref.: #66794]	pyrimidine metabolism	73.33	33 of 45
[Ref.: #66794]	3-phenylpropionate degradation	73.33	11 of 15
[Ref.: #66794]	methionine metabolism	73.08	19 of 26
[Ref.: #66794]	lysine metabolism	71.43	30 of 42
[Ref.: #66794]	heme metabolism	71.43	10 of 14
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	arginine metabolism	70.83	17 of 24
[Ref.: #66794]	4-hydroxyphenylacetate degradation	70	7 of 10
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	4-hydroxymandelate degradation	66.67	6 of 9
[Ref.: #66794]	non-pathway related	65.79	25 of 38
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	sulfate reduction	61.54	8 of 13
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	phenol degradation	60	12 of 20
[Ref.: #66794]	flavin biosynthesis	60	9 of 15
[Ref.: #66794]	oxidative phosphorylation	59.34	54 of 91
[Ref.: #66794]	isoprenoid biosynthesis	57.69	15 of 26
[Ref.: #66794]	degradation of sugar alcohols	56.25	9 of 16
[Ref.: #66794]	androgen and estrogen metabolism	56.25	9 of 16
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	starch degradation	50	5 of 10
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	chlorophyll metabolism	50	9 of 18
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	carnitine metabolism	50	4 of 8
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	polyamine pathway	47.83	11 of 23
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	cholesterol biosynthesis	45.45	5 of 11
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	vitamin B12 metabolism	41.18	14 of 34
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	38.46	5 of 13
[Ref.: #66794]	carotenoid biosynthesis	36.36	8 of 22
[Ref.: #66794]	degradation of sugar acids	36	9 of 25
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of pentoses	32.14	9 of 28
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	methanogenesis from CO2	25	3 of 12
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18000]	Sample type/isolated from	rhizosphere soils of sesame Sesamum indicum L.
[Ref.: #18000]	Host species	Sesamum indicum
[Ref.: #18000]	Geographic location (country and/or sea, region)	Jung ha-dong
[Ref.: #18000]	Country	Republic of Korea
[Ref.: #18000]	Country ISO 3 Code	KOR
[Ref.: #18000]	Continent	Asia

[Ref.: #123526]	Sample type/isolated from	Environment, Sesam, rhizosphere soils
[Ref.: #123526]	Geographic location (country and/or sea, region)	Jung ha dong
[Ref.: #123526]	Country	Republic of Korea
[Ref.: #123526]	Country ISO 3 Code	KOR
[Ref.: #123526]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF397578 (>99% sequence identity) for Pandoraea thiooxydans subclade from Microbeatlas

Aquatic Samples	210
Soil Samples	299
Animal Samples	166
Plant Samples	2151
Total Samples	2826

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18000]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123526]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18000]	Pandoraea thiooxydans strain ATSB16 16S ribosomal RNA gene, partial sequence	EF397578	1410	GenBank ENA	445709 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pandoraea thiooxydans DSM 25325	GCA_001017775	complete	GenBank ENA	445709 tax ID	*
[Ref.: #66792]	Pandoraea thiooxydans ATSB16	GCA_001931675	complete	GenBank ENA	445709 tax ID	*
[Ref.: #66792]	Pandoraea thiooxydans strain ATSB16	445709.9	complete	PATRIC	445709 tax ID	*
[Ref.: #66792]	Pandoraea thiooxydans strain DSM 25325	445709.3	complete	PATRIC	445709 tax ID	*
[Ref.: #66792]	Pandoraea thiooxydans ATSB16	2721755763	complete	JGI IMG/M	445709 tax ID	*
[Ref.: #66792]	Pandoraea thiooxydans DSM 25325	2648501246	complete	JGI IMG/M	445709 tax ID	*

[Ref.: #18000]	GC-content	64.0 mol%
[Ref.: #23162]	GC-content	64.0 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pandoraea thiooxydans DSM 25325 NCBI: GCA_001017775.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pandoraea thiooxydans DSM 25325 NCBI: GCA_001017775.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.994	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.417	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	80.312	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.27	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.813	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	82.701	no

Availability in culture collections External links

[Ref.: #18000]

Culture collection no.

DSM 25325, KACC 12757, LMG 24779, CIP 110207

[Ref.: #71708]

SI-ID 356279

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of Pandoraea thiooxydans DSM 25325(T), a thiosulfate-oxidizing bacterium.	Yong D, Ee R, Lim YL, Yu CY, Ang GY, How KY, Tee KK, Yin WF, Chan KG	J Biotechnol	10.1016/j.jbiotec.2015.11.009	2015	*
Phylogeny	Pandoraea thiooxydans sp. nov., a facultatively chemolithotrophic, thiosulfate-oxidizing bacterium isolated from rhizosphere soils of sesame (Sesamum indicum L.).	Anandham R, Indiragandhi P, Kwon SW, Sa TM, Jeon CO, Kim YK, Jee HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.012823-0	2009	*

References

#18000

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25325

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23162

Rangasamy Anandham, Pandiyan Indiragandhi, Soon Wo Kwon, Tong Min Sa, Che Ok Jeon, Yong Ki Kim, Hyeong Jin Jee: Pandoraea thiooxydans sp. nov., a facultatively chemolithotrophic, thiosulfate-oxidizing bacterium isolated from rhizosphere soils of sesame (Sesamum indicum L.). IJSEM 60: 21 - 26 2010 ( DOI 10.1099/ijs.0.012823-0 , PubMed 19643869 )

#42013 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71708

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID356279.1 )

#123526 Collection of Institut Pasteur ; Curators of the CIP; CIP 110207
* These data were automatically processed and therefore are not curated

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Pandoraea thiooxydans DSM 25325

Pandoraea thiooxydans DSM 25325

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