Paraburkholderia terricola (DSM 17221, CCM 7153, CCUG 44527)

Name: Paraburkholderia terricola (DSM 17221, CCM 7153, CCUG 44527)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1963

Type strain

Strain Designation R-8118

Culture col. no. DSM 17221 CCM 7153 CCUG 44527 CIP 107794 LMG 20594 2 more

NCBI tax ID(s) 169427

Special Collections DSMZ CCUG JCM CIP

Links

Paraburkholderia terricola R-8118 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from agricultural soil.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 22066

LMG 20594,CCUG 44527,CIP 107794,CCM 7153,DSM 17221,JCM 13473

@ref 20215

Last LPSN update 2025-12-16 09:47:13

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Paraburkholderia

Species Paraburkholderia terricola

Full scientific name Paraburkholderia terricola (Goris et al. 2003) Sawana et al. 2015

Synonyms (1)

Burkholderia terricola

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
123473	negative	rod-shaped
125438	negative		97.454
125439	negative		95.7

Pigmentation

@ref	Production	Name
123473		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6823	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
6823	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
41987	MEDIUM 6 - Columbia agar with 10 % horse blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
123473	CIP Medium 6	Medium recipe at CIP
123473	CIP Medium 72	Medium recipe at CIP
6823	TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)	Medium recipe at MediaDive	Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6823	positive	growth	30	mesophilic
6823	positive	growth	28
41987	positive	growth	30	mesophilic
56367	positive	growth	28	mesophilic
56367	positive	growth	30	mesophilic
67770	positive	growth	28	mesophilic
123473	positive	growth	10-37
123473	negative	growth	5
123473	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
56367	aerobe
123473	obligate aerobe
125439	obligate aerobe	99.2

Spore formation

@ref	Spore formation	Confidence
125439		94.5

Halophily

@ref	Salt	Growth	Tested relation	Concentration
123473	NaCl	positive	growth	0 %
123473	NaCl		growth	2 %
123473	NaCl		growth	4 %
123473	NaCl		growth	6 %
123473	NaCl		growth	8 %
123473	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
123473	16947 ChEBI	citrate	+	carbon source
123473	4853 ChEBI	esculin	-	hydrolysis
123473	17632 ChEBI	nitrate	+	reduction
123473	17632 ChEBI	nitrate	-	respiration
123473	16301 ChEBI	nitrite	-	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
123473	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123473	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
123473	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
123473	amylase	-
68382	beta-galactosidase	+	3.2.1.23	from API zym
123473	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123473	caseinase	-	3.4.21.50
123473	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
123473	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
123473	gelatinase	-
123473	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
123473	lipase	-
68382	lipase (C 14)	-		from API zym
123473	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123473	ornithine decarboxylase	-	4.1.1.17
123473	oxidase	+
123473	protease	-
68382	trypsin	-	3.4.21.4	from API zym
123473	tryptophan deaminase	-
123473	tween esterase	-
123473	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

56367

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	23.6	17.824
C17:0 CYCLO	22.1	16.888
C16:0	15.8	16
C16:1 ω7c	8.5	15.819
C19:0 CYCLO ω8c	8.4	18.9
C16:0 3OH	4.7	17.52
C14:0	4.6	14
C14:0 3OH/C16:1 ISO I	4.5	15.485
C16:1 2OH	2.5	17.047
C16:0 2OH	2.3	17.233
C18:1 2OH	1.3	19.088
C16:1 ω5c	0.5	15.908
C18:0	0.5	18
C15:0	0.4	15
C17:0	0.3	17

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123473	-	+	+	+	-	+	-	-	-	-	+	+	-	+	-	-	+	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
123473	not determinedn.d.	+	+	+	+	+	-	-	+	-	-	-	+	-	+	-	-	-	-	-	+	+	+	-	+	+	-	+	+	+	-	-	+	+	+	-	-	+	+	-	+	-	-	-	+	+	+	+	+	+	+	+	+	-	+	+	+	+	+	-	+	+	+	+	+	+	-	-	+	-	-	-	+	-	+	-	+	+	+	-	+	+	+	+	+	+	-	+	-	+	+	+	+	-	+	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	-
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6823	agricultural soil		Belgium	BEL	Europe
56367	Agricultural soil	Pittem	Belgium	BEL	Europe
67770	Agricultural soil at depths of 30 to 60 cm	Pittem	Belgium	BEL	Europe
123473	Environment, Agricultural soil		Belgium	BEL	Europe

Taxonmaps

69479

Global distribution of 16S sequence HQ849104 (>99% sequence identity) for Paraburkholderia from Microbeatlas

Aquatic Samples	16
Soil Samples	76
Animal Samples	1
Plant Samples	20
Total Samples	113

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6823	1	Risk group (German classification) According to TRBA 466
123473	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM90283381v1 assembly for Paraburkholderia terricola LMG 20594	scaffold	GCA_902833815	169427.9	8003948350	169427	60.72
67770	IMG-taxon 2654588105 annotated assembly for Paraburkholderia terricola LMG 20594	scaffold	GCA_900142195	169427.4	2654588105	169427	55.1

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Burkholderia terricola strain LMG 20594 16S ribosomal RNA gene, partial sequence	HQ849104	1126		169427
6823	Burkholderia terricola 16S ribosomal RNA gene, partial sequence	AY040362	1497		169427

GC content

@ref	GC-content (mol%)	Method
67770	60	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paraburkholderia terricola LMG 20594
NCBI: GCA_902833815

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.50	no
125439	motility	BacteriaNetⓘ	yes	65.00	no
125439	gram_stain	BacteriaNetⓘ	negative	95.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paraburkholderia terricola LMG 20594
NCBI: GCA_902833815.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.45	no
125438	anaerobic	anaerobicⓘ	no	98.15	no
125438	aerobic	aerobicⓘ	yes	89.38	yes
125438	spore-forming	spore-formingⓘ	no	86.05	no
125438	thermophilic	thermophileⓘ	no	97.99	no
125438	flagellated	motile2+ⓘ	yes	80.68	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species.	Sawana A, Adeolu M, Gupta RS.	Front Genet	10.3389/fgene.2014.00429	2014
	Counteracting Grey Mould (Botrytis cinerea) in Grapevine 'Glera' Using Three Putative Biological Control Agent Strains (Paraburkholderia sp., Pseudomonas sp., and Acinetobacter sp.): Impact on Symptoms, Yield, and Gene Expression.	Mian G, Belfiore N, Marcuzzo P, Spinelli F, Tomasi D, Colautti A.	Microorganisms	10.3390/microorganisms12081515	2024
	The Potato Yam Phyllosphere Ectosymbiont Paraburkholderia sp. Msb3 Is a Potent Growth Promotor in Tomato.	Herpell JB, Schindler F, Bejtovic M, Fragner L, Diallo B, Bellaire A, Kublik S, Foesel BU, Gschwendtner S, Kerou M, Schloter M, Weckwerth W.	Front Microbiol	10.3389/fmicb.2020.00581	2020
	Genomic Assemblies of Members of Burkholderia and Related Genera as a Resource for Natural Product Discovery.	Mullins AJ, Jones C, Bull MJ, Webster G, Parkhill J, Connor TR, Murray JAH, Challis GL, Mahenthiralingam E.	Microbiol Resour Announc	10.1128/mra.00485-20	2020
Phylogeny	Paraburkholderia panacihumi sp. nov., an isolate from ginseng-cultivated soil, is antagonistic against root rot fungal pathogen.	Huo Y, Kang JP, Kim YJ, Yang DC	Arch Microbiol	10.1007/s00203-018-1530-2	2018
Phylogeny	Burkholderia monticola sp. nov., isolated from mountain soil.	Baek I, Seo B, Lee I, Yi H, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.066001-0	2014
Phylogeny	Burkholderia ginsengisoli sp. nov., a beta-glucosidase-producing bacterium isolated from soil of a ginseng field.	Kim HB, Park MJ, Yang HC, An DS, Jin HZ, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.64387-0	2006

References

#6823	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17221
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#41987	; Curators of the CIP;
#56367	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 44527
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123473	Collection of Institut Pasteur ; Curators of the CIP; CIP 107794
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paraburkholderia terricola (DSM 17221, CCM 7153, CCUG 44527)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Fatty acid profile?

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_902833815

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

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Fatty acid profile