Name: Caballeronia sordidicola BL 011226
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1962

Type strain:

Species: Caballeronia sordidicola

Strain Designation: BL 011226, S5-B

Culture col. no.: DSM 17212, CCUG 49583, JCM 11778, KCTC 12081, CIP 108192, LMG 22029

Strain history: CIP <- 2003, JCM <- 2002, Y.W. Lim: strain S5-B

NCBI tax ID(s): 196367 (species)

SI-ID 49234

KCTC 12081, KCTC 12082, JCM 11778, LMG 22029, DSM 17212, CIP 108192, CCUG 49583

Other strains from Caballeronia sordidicola

C. sordidicola CCUG 59832
C. sordidicola JCM 11779, KCTC 12082

Section

Caballeronia sordidicola BL 011226 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Phanaerochaete sordida culture.

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Caballeronia*
	Species	**Caballeronia sordidicola**
	Full Scientific Name (LPSN)	Caballeronia sordidicola (Lim et al. 2003) Dobritsa and Samadpour 2016

	Synonym	Burkholderia sordidicola
	Synonym	Paraburkholderia sordidicola

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #122682]	Gram stain	negative

[Ref.: #122682]	Cell shape	rod-shaped

[Ref.: #122682]	Motility	no

[Ref.: #58618]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6818]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #6818]

Culture medium growth

[Ref.: #6818]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6818]

Culture medium composition

expand / minimize

[Ref.: #41985]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41985]

Culture medium growth

[Ref.: #41985]

Culture medium composition

expand / minimize

[Ref.: #122682]

Culture medium

CIP Medium 72

[Ref.: #122682]

Culture medium growth

[Ref.: #122682]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6818]		growth	28 °C
[Ref.: #41985]		growth	30 °C
[Ref.: #58618]		growth	20-30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #67771]		growth	30 °C
[Ref.: #122682]		growth	10-37 °C
[Ref.: #122682]	no	growth	5 °C
[Ref.: #122682]	no	growth	41 °C

[Ref.: #6818]	Temperature range	mesophilic
[Ref.: #41985]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic
[Ref.: #122682]	Temperature range	psychrophilic
[Ref.: #122682]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #58618]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #122682]	Oxygen tolerance	facultative anaerobe

	Salt	Tested relation		Salt conc.
[Ref.: #122682]	NaCl		growth	0-4	%
[Ref.: #122682]	NaCl	no	growth	6	%
[Ref.: #122682]	NaCl	no	growth	8	%
[Ref.: #122682]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #122682]	esculin ChEBI	+	hydrolysis
[Ref.: #122682]	nitrate ChEBI	+	reduction
[Ref.: #122682]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122682]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #122682]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122682]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #122682]	amylase	+
[Ref.: #122682]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122682]	caseinase	-	3.4.21.50
[Ref.: #122682]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #122682]	DNase	-
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #122682]	gelatinase	-
[Ref.: #122682]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122682]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122682]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122682]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122682]	oxidase	-
[Ref.: #122682]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122682]	tryptophan deaminase	-
[Ref.: #122682]	tween esterase	-
[Ref.: #122682]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122682]	2636	not determinedn.d.	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	+	+	-	+	+	+	+	+	-	+	+	-	-	+	+	-	+	-	-	-	-	-	-	+	+	+	+	-	-	+	-	+	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	+	+	+	+	-	+	-	-	-	+	-	+	+	+	+	-	+	+	-	-	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122682]	10969	-	-	-	-	-	+	-	-	-	-	+	+	-	-	-	+	-	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6818]	Sample type/isolated from	Phanaerochaete sordida culture
[Ref.: #6818]	Host species	Phanerochaete sordida
[Ref.: #6818]	Country	Republic of Korea
[Ref.: #6818]	Country ISO 3 Code	KOR
[Ref.: #6818]	Continent	Asia

[Ref.: #58618]	Sample type/isolated from	White rot fungus,Phanerochaete sordida

[Ref.: #67770]	Sample type/isolated from	White-rot fungus Phanerochaete sordida
[Ref.: #67770]	Host species	Phanerochaete sordida

[Ref.: #67771]	Sample type/isolated from	From `Phanerochaete sordida`
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #122682]	Sample type/isolated from	The white-rot fungus Phanerochaete sordida
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Lab enrichment
#Host	#Fungi	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF512826 (>99% sequence identity) for Burkholderia from Microbeatlas

Aquatic Samples	101
Soil Samples	704
Animal Samples	95
Plant Samples	210
Total Samples	1110

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6818]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122682]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6818]	Burkholderia sordidicola strain S5-B 16S ribosomal RNA gene, partial sequence	AF512826	1469	ENA	196367 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Caballeronia sordidicola type strain: GW41-1564	GCA_001544455	contig	GenBank	196367 tax ID
[Ref.: #66792]	Burkholderia sordidicola strain LMG 22029	196367.6	wgs	PATRIC	196367 tax ID	*
[Ref.: #66792]	Caballeronia sordidicola LMG 22029	2713896994	draft	JGI IMG/M	196367 tax ID	*

[Ref.: #67770]

GC-content

61.3 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Burkholderia sordidicola strain LMG 22029 PATRIC: 196367.6
[Ref.: #69480]	motile	yes	88.136	no
[Ref.: #69480]	gram-positive	no	97.905	yes
[Ref.: #69480]	anaerobic	no	98.955	yes
[Ref.: #69480]	aerobic	yes	87.186	yes
[Ref.: #69480]	halophile	no	92.205	no
[Ref.: #69480]	spore-forming	no	93.246	no
[Ref.: #69480]	glucose-util	yes	87.639	no
[Ref.: #69480]	flagellated	no	88.142	no
[Ref.: #69480]	thermophile	no	99.436	yes
[Ref.: #69480]	glucose-ferment	no	89.79	no

Availability in culture collections External links

[Ref.: #6818]

Culture collection no.

DSM 17212, CCUG 49583, JCM 11778, KCTC 12081, CIP 108192, LMG 22029

[Ref.: #71607]

SI-ID 49234

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Caballeronia ginsengisoli sp. nov., isolated from ginseng cultivating soil.	Quan XT, Liu QZ, Siddiqi MZ, Im WT	Arch Microbiol	10.1007/s00203-018-1577-0	2018	*
Phylogeny	Burkholderia zhejiangensis sp. nov., a methyl-parathion-degrading bacterium isolated from a wastewater-treatment system.	Lu P, Zheng LQ, Sun JJ, Liu HM, Li SP, Hong Q, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.035428-0	2011	*
Phylogeny	Burkholderia sordidicola sp. nov., isolated from the white-rot fungus Phanerochaete sordida.	Lim YW, Baik KS, Han SK, Kim SB, Bae KS	Int J Syst Evol Microbiol	10.1099/ijs.0.02456-0	2003	*

References

#6818

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17212

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#41985 ; Curators of the CIP;
#58618 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 49583

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71607

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49234.1 )

#122682 Collection of Institut Pasteur ; Curators of the CIP; CIP 108192
* These data were automatically processed and therefore are not curated

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Burkholderia sordidicola strain LMG 22029

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