Burkholderia anthina (ATCC BAA-698, CIP 108228, DSM 16086)

Name: Burkholderia anthina (ATCC BAA-698, CIP 108228, DSM 16086)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1945

Type strain

Strain Designation J2863, W92B

Culture col. no. ATCC BAA-698 CIP 108228 DSM 16086 CCUG 46047 LMG 20980 2 more

NCBI tax ID(s) 179879

Special Collections DSMZ CCUG CIP

Links

Burkholderia anthina J2863 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from rhizosphere soil of house plant.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 18511

LMG 20980,CCUG 46047,ATCC BAA-698,DSM 16086,CIP 108228

@ref 20215

Last LPSN update 2025-12-16 09:47:13

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Burkholderia

Species Burkholderia anthina

Full scientific name Burkholderia anthina Vandamme et al. 2002

BacDive ID	Other strains from **Burkholderia anthina** (2)	Type strain
152199	B. anthina CCUG 46048, LMG 20982
152200	B. anthina CCUG 46049, LMG 20983

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
116410	negative	rod-shaped
125438	negative		98
125439	negative		97.5

Colony morphology

@ref	Type of hemolysis	Incubation period
6282	gamma	1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6282	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
34317	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116410	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6282	positive	growth	28	mesophilic
34317	positive	growth	30	mesophilic
57038	positive	growth	30-37	mesophilic
116410	positive	growth	37	mesophilic
116410	negative	growth	5
116410	negative	growth	10
116410	negative	growth	25
116410	negative	growth	30
116410	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
57038	aerobe
116410	facultative anaerobe
125438	aerobe	90.078
125439	aerobe	97.4

Spore formation

@ref	Spore formation	Confidence
125439		98

Halophily

@ref	Salt	Growth	Tested relation	Concentration
116410	NaCl	positive	growth	0-2 %
116410	NaCl		growth	4 %
116410	NaCl		growth	6 %
116410	NaCl		growth	8 %
116410	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
116410	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
116410	17632 ChEBI	nitrate	-	reduction
116410	17632 ChEBI	nitrate	+	respiration
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
116410	16301 ChEBI	nitrite	-	reduction
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116410	35581 ChEBI	indole
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116410	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
116410	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
116410	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116410	caseinase	-	3.4.21.50
6282	catalase	+	1.11.1.6
116410	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
6282	cytochrome-c oxidase	+	1.9.3.1
116410	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
116410	gelatinase	-
68369	gelatinase	-		from API 20NE
116410	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
116410	lipase	-
68382	lipase (C 14)	+		from API zym
116410	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116410	ornithine decarboxylase	-	4.1.1.17
116410	oxidase	+
116410	protease	-
68382	trypsin	-	3.4.21.4	from API zym
116410	tryptophan deaminase	-
116410	tween esterase	-
116410	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116410	-	-	+	+	+	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
6282	+	-	+/-	-	-	-	-	+	+	+	+	+	+	-	+	+	+	+	+	+	+
6282	+	-	-	-	-	-	-	+	+	+	+	+	+	-	+	+	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	#House
#Environmental	#Terrestrial	#Soil
#Host	#Plants	-
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
6282	rhizosphere soil of house plant		Nashville	USA	USA	North America
57038	Soil rhizosphere	1997	Nashville	USA	USA	North America
116410	Environment, Soil rhizosphere		Nashville, Tennessee	United States of America	USA	North America	1997

Taxonmaps

69479

Global distribution of 16S sequence JX986972 (>99% sequence identity) for Burkholderia from Microbeatlas

Aquatic Samples	564
Soil Samples	1055
Animal Samples	1930
Plant Samples	1505
Total Samples	5054

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
6282	yes, in single cases	1	Risk group (German classification) According to TRBA 466
116410		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1683672v1 assembly for Burkholderia anthina DSM 16086	contig	GCA_016836725	179879.36		179879	65.23
66792	ASM90249899v1 assembly for Burkholderia anthina	contig	GCA_902498995	179879.20	8115376246	179879	64.7
66792	ASM90283039v1 assembly for Burkholderia anthina LMG 20980	contig	GCA_902830395	179879.31	8115076544	179879	61.89

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Burkholderia anthina strain LMG 20980 16S ribosomal RNA gene, partial sequence	JX986972	1485	179879
6282	Burkholderia anthina strain LMG 20980 16S ribosomal RNA gene, partial sequence	HQ849074	1124	179879
124043	Burkholderia anthina strain LMG 20980 16S ribosomal RNA gene, partial sequence.	MT940974	680	179879

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Burkholderia anthina LMG 20980
NCBI: GCA_902498995

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.00	no
125439	motility	BacteriaNetⓘ	yes	79.40	no
125439	gram_stain	BacteriaNetⓘ	negative	97.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	97.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Burkholderia anthina strain DSM 16086
PATRIC: 179879.36

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	98.09	yes
125438	spore-forming	spore-formingⓘ	no	87.63	no
125438	aerobic	aerobicⓘ	yes	90.08	no
125438	thermophilic	thermophileⓘ	no	97.50	yes
125438	flagellated	motile2+ⓘ	yes	83.93	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Genomic adaptation of Burkholderia anthina to glyphosate uncovers a novel herbicide resistance mechanism.	Schwedt I, Collignon M, Mittelstadt C, Giudici F, Rapp J, Meissner J, Link H, Hertel R, Commichau FM.	Environ Microbiol Rep	10.1111/1758-2229.13184	2023
Genetics	Genome sequence data of Burkholderia sp. IMCC1007 isolated from maize rhizosphere: A potential strain in fusaric acid mycotoxin biodegradation.	Mohd Din ARJ, Othman NZ.	Data Brief	10.1016/j.dib.2023.109204	2023
Genetics	Genomic analyses of Burkholderia respiratory isolates indicates two evolutionarily distinct B. anthina clades.	Pham A, Volmer JG, Chambers DC, Smith DJ, Reid DW, Burr L, Wells TJ.	Front Microbiol	10.3389/fmicb.2023.1274280	2023
	Genomic Assemblies of Members of Burkholderia and Related Genera as a Resource for Natural Product Discovery.	Mullins AJ, Jones C, Bull MJ, Webster G, Parkhill J, Connor TR, Murray JAH, Challis GL, Mahenthiralingam E.	Microbiol Resour Announc	10.1128/mra.00485-20	2020
Cultivation	Evaluation of Three Culture Media for Isolation of Burkholderia cepacia Complex from Respiratory Samples of Patients with Cystic Fibrosis.	Marrs ECL, Perry A, Perry JD.	Microorganisms	10.3390/microorganisms9122604	2021
	Effect of beta-Lactamase inhibitors on in vitro activity of beta-Lactam antibiotics against Burkholderia cepacia complex species.	Everaert A, Coenye T.	Antimicrob Resist Infect Control	10.1186/s13756-016-0142-3	2016
	Bacterial-Plant-Interactions: Approaches to Unravel the Biological Function of Bacterial Volatiles in the Rhizosphere.	Kai M, Effmert U, Piechulla B.	Front Microbiol	10.3389/fmicb.2016.00108	2016
Pathogenicity	Investigating the Role of the Host Multidrug Resistance Associated Protein Transporter Family in Burkholderia cepacia Complex Pathogenicity Using a Caenorhabditis elegans Infection Model.	Tedesco P, Visone M, Parrilli E, Tutino ML, Perrin E, Maida I, Fani R, Ballestriero F, Santos R, Pinilla C, Di Schiavi E, Tegos G, de Pascale D.	PLoS One	10.1371/journal.pone.0142883	2015
Phylogeny	Development of a species-specific fur gene-based method for identification of the Burkholderia cepacia complex.	Lynch KH, Dennis JJ, Dennis JJ.	J Clin Microbiol	10.1128/jcm.01460-07	2008
Pathogenicity	Biocide susceptibility of the Burkholderia cepacia complex.	Rose H, Baldwin A, Dowson CG, Mahenthiralingam E.	J Antimicrob Chemother	10.1093/jac/dkn540	2009

References

#6282	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16086
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#34317	; Curators of the CIP;
#57038	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46047
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116410	Collection of Institut Pasteur ; Curators of the CIP; CIP 108228
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Burkholderia anthina (ATCC BAA-698, CIP 108228, DSM 16086)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016836725

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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