Strain identifier

BacDive ID: 1945

Type strain: Yes

Species: Burkholderia anthina

Strain Designation: J2863, W92B

Strain history: CIP <- 2004, CCUG <- 2002, LMG <- J. Govan, Edinburgh, UK, formely Burkholderia cepacia genomovar VIII

NCBI tax ID(s): 179879 (species)

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General

@ref: 6282

BacDive-ID: 1945

DSM-Number: 16086

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped, human pathogen

description: Burkholderia anthina J2863 is an aerobe, mesophilic, Gram-negative human pathogen that was isolated from rhizosphere soil of house plant.

NCBI tax id

  • NCBI tax id: 179879
  • Matching level: species

strain history

@refhistory
6282<- CCUG <- LMG <- P. Vandamme
116410CIP <- 2004, CCUG <- 2002, LMG <- J. Govan, Edinburgh, UK, formely Burkholderia cepacia genomovar VIII

doi: 10.13145/bacdive1945.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Burkholderia
  • species: Burkholderia anthina
  • full scientific name: Burkholderia anthina Vandamme et al. 2002

@ref: 6282

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Burkholderia

species: Burkholderia anthina

full scientific name: Burkholderia anthina Vandamme et al. 2002

strain designation: J2863, W92B

type strain: yes

Morphology

cell morphology

  • @ref: 116410
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 6282
  • type of hemolysis: gamma
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6282CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
34317MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116410CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
6282positivegrowth28mesophilic
34317positivegrowth30mesophilic
57038positivegrowth30-37mesophilic
116410positivegrowth37mesophilic
116410nogrowth5psychrophilic
116410nogrowth10psychrophilic
116410nogrowth25mesophilic
116410nogrowth30mesophilic
116410nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
57038aerobe
116410facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
116410NaClpositivegrowth0-2 %
116410NaClnogrowth4 %
116410NaClnogrowth6 %
116410NaClnogrowth8 %
116410NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836927897tryptophan-energy source
6836917632nitrate+reduction
1164104853esculin-hydrolysis
11641017632nitrate-reduction
11641016301nitrite-reduction
11641017632nitrate+respiration

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
11641035581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
6282catalase+1.11.1.6
6282cytochrome-c oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)+
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
116410oxidase+
116410beta-galactosidase-3.2.1.23
116410alcohol dehydrogenase+1.1.1.1
116410gelatinase-
116410amylase-
116410DNase-
116410caseinase-3.4.21.50
116410catalase-1.11.1.6
116410tween esterase-
116410lecithinase-
116410lipase-
116410lysine decarboxylase-4.1.1.18
116410ornithine decarboxylase-4.1.1.17
116410protease-
116410tryptophan deaminase-
116410urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116410--++++----++---+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
6282+------++++++-+++++++
6282+-+/-----++++++-+++++++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
6282rhizosphere soil of house plantNashvilleUSAUSANorth America
57038Soil rhizosphereNashvilleUSAUSANorth America1997
116410Environment, Soil rhizosphereNashville, TennesseeUnited States of AmericaUSANorth America1997

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment#House
#Environmental#Terrestrial#Soil
#Host#Plants
#Host Body-Site#Plant#Rhizosphere

taxonmaps

  • @ref: 69479
  • File name: preview.99_198.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_18;97_18;98_21;99_198&stattab=map
  • Last taxonomy: Burkholderia
  • 16S sequence: JX986972
  • Sequence Identity:
  • Total samples: 5054
  • soil counts: 1055
  • aquatic counts: 564
  • animal counts: 1930
  • plant counts: 1505

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
6282yes, in single cases1Risk group (German classification)
1164101Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Burkholderia anthina strain LMG 20980 16S ribosomal RNA gene, partial sequenceJX9869721485ena179879
6282Burkholderia anthina strain LMG 20980 16S ribosomal RNA gene, partial sequenceHQ8490741124ena179879

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Burkholderia anthina LMG 20980GCA_902498995contigncbi179879
66792Burkholderia anthina LMG 20980GCA_902830395contigncbi179879
66792Burkholderia anthina DSM 16086GCA_016836725contigncbi179879
66792Burkholderia anthina strain DSM 16086179879.36wgspatric179879
66792Burkholderia anthina strain LMG 20980179879.20wgspatric179879
66792Burkholderia anthina strain LMG 20980179879.31wgspatric179879

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes88.273no
gram-positiveno98.082no
anaerobicno98.596yes
aerobicyes87.059yes
halophileno88.935no
spore-formingno94.363no
glucose-utilyes91.122yes
flagellatedno82.2no
thermophileno99.27yes
glucose-fermentno84.782no

External links

@ref: 6282

culture collection no.: ATCC BAA 698, CIP 108228, DSM 16086, CCUG 46047, LMG 20980

straininfo link

  • @ref: 71590
  • straininfo: 18511

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6282Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16086)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16086
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34317Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5827
57038Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 46047)https://www.ccug.se/strain?id=46047
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71590Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID18511.1StrainInfo: A central database for resolving microbial strain identifiers
116410Curators of the CIPCollection of Institut Pasteur (CIP 108228)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108228