Name: Brevibacterium oceani BBH7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1866

Type strain:

Species: Brevibacterium oceani

Strain Designation: BBH7

Culture col. no.: DSM 21578, IAM 15353, JCM 21798, LMG 23457, BCRC 16991, NCIMB 14558, CIP 109608

Strain history: CIP <- 2007, S. Shivaji, CCMB, Hyderabad, India: strain BBH7

NCBI tax ID(s): 358099 (species)

SI-ID 290077

LMG 23457, IAM 15353, JCM 21798, CIP 109608, DSM 21578

Section

Brevibacterium oceani BBH7 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from deep-sea sediment of the Chagos Trench, Indian Ocean .

Gram-positive
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Brevibacteriaceae*
	Genus	*Brevibacterium*
	Species	**Brevibacterium oceani**
	Full Scientific Name (LPSN)	Brevibacterium oceani Bhadra et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32043]	Gram stain	positive
[Ref.: #121381]	Gram stain	positive

[Ref.: #32043]	Cell length	2.5 µm

[Ref.: #32043]	Cell width	1.1 µm

[Ref.: #32043]	Cell shape	rod-shaped
[Ref.: #121381]	Cell shape	rod-shaped

[Ref.: #32043]	Motility	no
[Ref.: #121381]	Motility	no

[Ref.: #32043]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15820]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #15820]

Culture medium growth

[Ref.: #15820]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15820]

Culture medium composition

expand / minimize

[Ref.: #36090]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #36090]

Culture medium growth

[Ref.: #36090]

Culture medium composition

expand / minimize

[Ref.: #121381]

Culture medium

CIP Medium 72

[Ref.: #121381]

Culture medium growth

[Ref.: #121381]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15820]	growth	28 °C
[Ref.: #32043]	growth	10-35 °C
[Ref.: #32043]	optimum	27 °C
[Ref.: #36090]	growth	25 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #15820]	Temperature range	mesophilic
[Ref.: #32043]	Temperature range	mesophilic
[Ref.: #36090]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32043]			optimum	6.8
[Ref.: #32043]			growth	5.2-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #121381]

Oxygen tolerance

obligate aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32043]		NaCl		growth	<12	%

[Ref.: #67770]

Observation

quinones: MK-8(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32043]	arginine ChEBI	+	carbon source
[Ref.: #32043]	asparagine ChEBI	+	carbon source
[Ref.: #32043]	malonate ChEBI	+	carbon source
[Ref.: #121381]	nitrate ChEBI	-	reduction
[Ref.: #121381]	nitrite ChEBI	-	reduction
[Ref.: #32043]	proline ChEBI	+	carbon source
[Ref.: #32043]	serine ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #121381]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32043]	catalase	+	1.11.1.6
[Ref.: #121381]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121381]	oxidase	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #121381]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121381]	11996	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15820]	Sample type/isolated from	deep-sea sediment of the Chagos Trench, Indian Ocean (11 º 06 ’ S, 72 º 31 ’ E)
[Ref.: #15820]	Geographic location (country and/or sea, region)	Chagos Trench, High Seas
[Ref.: #15820]	Country	Indian Ocean

[Ref.: #67770]	Sample type/isolated from	Deep-sea sediment at a water depth of 5,904 m
[Ref.: #67770]	Geographic location (country and/or sea, region)	Chagos Trench
[Ref.: #67770]	Country	Indian Ocean

[Ref.: #121381]	Sample type/isolated from	Environment, Deep sea sediment
[Ref.: #121381]	Geographic location (country and/or sea, region)	Indian Ocean
[Ref.: #121381]	Country	India
[Ref.: #121381]	Country ISO 3 Code	IND
[Ref.: #121381]	Continent	Asia
[Ref.: #121381]	Isolation date	2005
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15820]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121381]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Brevibacterium oceani partial rRNA gene, type strain BBH7T	AM158906	1505	ENA	358099 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Brevibacterium oceani BBH7	GCA_013623835	scaffold	GenBank	358099 tax ID	*

[Ref.: #15820]	GC-content	59.8-60.2 mol%
[Ref.: #67770]	GC-content	60 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Brevibacterium oceani BBH7 NCBI: GCA_013623835.1
[Ref.: #69480]	flagellated	no	97.464	no
[Ref.: #69480]	gram-positive	yes	90.645	yes
[Ref.: #69480]	anaerobic	no	99.411	no
[Ref.: #69480]	aerobic	yes	95.65	no
[Ref.: #69480]	halophile	yes	64.299	no
[Ref.: #69480]	spore-forming	no	87.997	no
[Ref.: #69480]	thermophile	no	99.58	no
[Ref.: #69480]	glucose-util	yes	88.96	no
[Ref.: #69480]	motile	no	93.948	yes
[Ref.: #69480]	glucose-ferment	no	93.693	no

Availability in culture collections External links

[Ref.: #15820]

Culture collection no.

DSM 21578, IAM 15353, JCM 21798, LMG 23457, BCRC 16991, NCIMB 14558, CIP 109608

[Ref.: #71511]

SI-ID 290077

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brevibacterium oceani sp. nov., isolated from deep-sea sediment of the Chagos Trench, Indian Ocean.	Bhadra B, Raghukumar C, Pindi PK, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.64869-0	2008	*

References

#15820

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21578

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32043

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28293 (see below)

#36090 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71511

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID290077.1 )

#121381 Collection of Institut Pasteur ; Curators of the CIP; CIP 109608

#28293

IJSEM 57 2008 ( DOI 10.1099/ijs.0.64869-0 , PubMed 18175683 )

* These data were automatically processed and therefore are not curated

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