Brevibacterium samyangense (DSM 19451, KCCM 42316, NRRL B-41420)

Name: Brevibacterium samyangense (DSM 19451, KCCM 42316, NRRL B-41420)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1865

Type strain

Strain Designation SST-8

Culture col. no. DSM 19451 KCCM 42316 NRRL B-41420 SST-8 JCM 14546

NCBI tax ID(s) 366888

Special Collections DSMZ JCM Literature strains

History <- NRRL (ARS) <- Soon Dong Lee, SST-8 KCCM 42316 <-- S. D. Lee SST-8.

Links

Brevibacterium samyangense SST-8 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from sand sediment.

spore-forming Gram-positive motile ovoid-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 297147

NRRL B-41420,JCM 14546,DSM 19451

@ref 20215

Last LPSN update 2026-02-09 11:18:12

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Brevibacteriaceae

Genus Brevibacterium

Species Brevibacterium samyangense

Full scientific name Brevibacterium samyangense Lee 2006

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
31784	positive	ovoid-shaped

Pigmentation

31784

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8025	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8025	positive	growth	28
31784	positive	growth	10-45
31784	positive	optimum	40-45
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
31784	positive	optimum	9-10.1
31784	positive	growth	6.1-10.1	alkaliphile

Physiology and metabolism

Oxygen tolerance

31784

Oxygen toleranceaerobe

Spore formation

31784

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31784	NaCl	positive	growth	0-15 %
31784	NaCl	positive	optimum	0-5 %

Observation

@ref	Observation
31784	aggregates in chains
67770	quinones: MK-8(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31784	30089 ChEBI	acetate	+	carbon source
31784	22599 ChEBI	arabinose	+	carbon source
31784	17057 ChEBI	cellobiose	+	carbon source
31784	23652 ChEBI	dextrin	+	carbon source
31784	28757 ChEBI	fructose	+	carbon source
31784	33984 ChEBI	fucose	+	carbon source
31784	28260 ChEBI	galactose	+	carbon source
31784	24175 ChEBI	galacturonate	+	carbon source
31784	17234 ChEBI	glucose	+	carbon source
31784	28087 ChEBI	glycogen	+	carbon source
31784	18403 ChEBI	L-arabitol	+	carbon source
31784	24996 ChEBI	lactate	+	carbon source
31784	17716 ChEBI	lactose	+	carbon source
31784	25115 ChEBI	malate	+	carbon source
31784	17306 ChEBI	maltose	+	carbon source
31784	29864 ChEBI	mannitol	+	carbon source
31784	37684 ChEBI	mannose	+	carbon source
31784	506227 ChEBI	N-acetylglucosamine	+	carbon source
31784	17272 ChEBI	propionate	+	carbon source
31784	16634 ChEBI	raffinose	+	carbon source
31784	26546 ChEBI	rhamnose	+	carbon source
31784	33942 ChEBI	ribose	+	carbon source
31784	17814 ChEBI	salicin	+	carbon source
31784	30911 ChEBI	sorbitol	+	carbon source
31784	17992 ChEBI	sucrose	+	carbon source
31784	27082 ChEBI	trehalose	+	carbon source
31784	17151 ChEBI	xylitol	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31784	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
8025	sand sediment	Samyang beach, Jeju Island	Republic of Korea	KOR	Asia
67770	Beach sediment of the coast of Jeju Island		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ344485 (>99% sequence identity) for Brevibacterium samyangense subclade from Microbeatlas

Aquatic Samples	89
Soil Samples	160
Animal Samples	1207
Plant Samples	43
Total Samples	1499

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8025	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3952984v1 assembly for Brevibacterium samyangense JCM 14546	scaffold	GCA_039529845	366888	33.01

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8025	Brevibacterium samyangense strain SST-8 16S ribosomal RNA gene, partial sequence	DQ344485	1426		366888

GC content

@ref	GC-content (mol%)	Method
8025	70.7
67770	70.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Tales of diversity: Genomic and morphological characteristics of forty-six Arthrobacter phages.	Klyczek KK, Bonilla JA, Jacobs-Sera D, Adair TL, Afram P, Allen KG, Archambault ML, Aziz RM, Bagnasco FG, Ball SL, Barrett NA, Benjamin RC, Blasi CJ, Borst K, Braun MA, Broomell H, Brown CB, Brynell ZS, Bue AB, Burke SO, Casazza W, Cautela JA, Chen K, Chimalakonda NS, Chudoff D, Connor JA, Cross TS, Curtis KN, Dahlke JA, Deaton BM, Degroote SJ, DeNigris DM, DeRuff KC, Dolan M, Dunbar D, Egan MS, Evans DR, Fahnestock AK, Farooq A, Finn G, Fratus CR, Gaffney BL, Garlena RA, Garrigan KE, Gibbon BC, Goedde MA, Guerrero Bustamante CA, Harrison M, Hartwell MC, Heckman EL, Huang J, Hughes LE, Hyduchak KM, Jacob AE, Kaku M, Karstens AW, Kenna MA, Khetarpal S, King RA, Kobokovich AL, Kolev H, Konde SA, Kriese E, Lamey ME, Lantz CN, Lapin JS, Lawson TO, Lee IY, Lee SM, Lee-Soety JY, Lehmann EM, London SC, Lopez AJ, Lynch KC, Mageeney CM, Martynyuk T, Mathew KJ, Mavrich TN, McDaniel CM, McDonald H, McManus CJ, Medrano JE, Mele FE, Menninger JE, Miller SN, Minick JE, Nabua CT, Napoli CK, Nkangabwa M, Oates EA, Ott CT, Pellerino SK, Pinamont WJ, Pirnie RT, Pizzorno MC, Plautz EJ, Pope WH, Pruett KM, Rickstrew G, Rimple PA, Rinehart CA, Robinson KM, Rose VA, Russell DA, Schick AM, Schlossman J, Schneider VM, Sells CA, Sieker JW, Silva MP, Silvi MM, Simon SE, Staples AK, Steed IL, Stowe EL, Stueven NA, Swartz PT, Sweet EA, Sweetman AT, Tender C, Terry K, Thomas C, Thomas DS, Thompson AR, Vanderveen L, Varma R, Vaught HL, Vo QD, Vonberg ZT, Ware VC, Warrad YM, Wathen KE, Weinstein JL, Wyper JF, Yankauskas JR, Zhang C, Hatfull GF.	PLoS One	10.1371/journal.pone.0180517	2017
Phylogeny	Brevibacterium rongguiense sp. nov., isolated from freshwater sediment.	Deng T, Lu H, Qian Y, Chen X, Yang X, Guo J, Sun G, Xu M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004379	2020
Phylogeny	Brevibacterium daeguense sp. nov., a nitrate-reducing bacterium isolated from a 4-chlorophenol enrichment culture.	Cui Y, Kang MS, Woo SG, Jin L, Kim KK, Park J, Lee M, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.038141-0	2012
Phylogeny	Brevibacterium album sp. nov., a novel actinobacterium isolated from a saline soil in China.	Tang SK, Wang Y, Schumann P, Stackebrandt E, Lou K, Jiang CL, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65183-0	2008
Phylogeny	Brevibacterium samyangense sp. nov., an actinomycete isolated from a beach sediment.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.64269-0	2006

References

#8025	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19451
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28056	IJSEM 1889 2006 ( DOI 10.1099/ijs.0.64269-0 , PubMed 16902026 )
#31784	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28056
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Brevibacterium samyangense (DSM 19451, KCCM 42316, NRRL B-41420)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039529845

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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