Name: Brevibacterium samyangense SST-8
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1865

Type strain:

Species: Brevibacterium samyangense

Strain Designation: SST-8

Culture col. no.: DSM 19451, KCCM 42316, NRRL B-41420, JCM 14546

Strain history: KCCM 42316 <-- S. D. Lee SST-8.

NCBI tax ID(s): 366888 (species)

SI-ID 297147

NRRL B-41420, JCM 14546, DSM 19451

Special Collections

Section

When using BacDive for research please cite our paper

Brevibacterium samyangense SST-8 is an aerobe, spore-forming, mesophilic bacterium that was isolated from sand sediment.

Gram-positive
motile
ovoid-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Brevibacteriaceae*
	Genus	*Brevibacterium*
	Species	**Brevibacterium samyangense**
	Full Scientific Name (LPSN)	Brevibacterium samyangense Lee 2006

Information on morphological and physiological properties Morphology

[Ref.: #31784]	Gram stain	positive

[Ref.: #31784]	Cell shape	ovoid-shaped

[Ref.: #31784]	Motility	yes

[Ref.: #31784]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8025]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #8025]

Culture medium growth

[Ref.: #8025]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8025]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8025]	growth	28 °C
[Ref.: #31784]	growth	10-45 °C
[Ref.: #31784]	optimum	40-45 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #31784]			optimum	9-10.1
[Ref.: #31784]			growth	6.1-10.1

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31784]

Oxygen tolerance

aerobe

[Ref.: #31784]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31784]		NaCl		growth	0-15	%
[Ref.: #31784]		NaCl		optimum	0-5	%

[Ref.: #31784]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-8(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31784]	acetate ChEBI	+	carbon source
[Ref.: #31784]	arabinose ChEBI	+	carbon source
[Ref.: #31784]	cellobiose ChEBI	+	carbon source
[Ref.: #31784]	dextrin ChEBI	+	carbon source
[Ref.: #31784]	fructose ChEBI	+	carbon source
[Ref.: #31784]	fucose ChEBI	+	carbon source
[Ref.: #31784]	galactose ChEBI	+	carbon source
[Ref.: #31784]	galacturonate ChEBI	+	carbon source
[Ref.: #31784]	glucose ChEBI	+	carbon source
[Ref.: #31784]	glycogen ChEBI	+	carbon source
[Ref.: #31784]	L-arabitol ChEBI	+	carbon source
[Ref.: #31784]	lactate ChEBI	+	carbon source
[Ref.: #31784]	lactose ChEBI	+	carbon source
[Ref.: #31784]	malate ChEBI	+	carbon source
[Ref.: #31784]	maltose ChEBI	+	carbon source
[Ref.: #31784]	mannitol ChEBI	+	carbon source
[Ref.: #31784]	mannose ChEBI	+	carbon source
[Ref.: #31784]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31784]	propionate ChEBI	+	carbon source
[Ref.: #31784]	raffinose ChEBI	+	carbon source
[Ref.: #31784]	rhamnose ChEBI	+	carbon source
[Ref.: #31784]	ribose ChEBI	+	carbon source
[Ref.: #31784]	salicin ChEBI	+	carbon source
[Ref.: #31784]	sorbitol ChEBI	+	carbon source
[Ref.: #31784]	sucrose ChEBI	+	carbon source
[Ref.: #31784]	trehalose ChEBI	+	carbon source
[Ref.: #31784]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31784]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8025]	Sample type/isolated from	sand sediment
[Ref.: #8025]	Geographic location (country and/or sea, region)	Samyang beach, Jeju Island
[Ref.: #8025]	Country	Republic of Korea
[Ref.: #8025]	Country ISO 3 Code	KOR
[Ref.: #8025]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Beach sediment of the coast of Jeju Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ344485 (>99% sequence identity) for Brevibacterium samyangense subclade from Microbeatlas

Aquatic Samples	89
Soil Samples	160
Animal Samples	1207
Plant Samples	43
Total Samples	1499

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8025]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8025]	Brevibacterium samyangense strain SST-8 16S ribosomal RNA gene, partial sequence	DQ344485	1426	GenBank ENA	366888 tax ID

[Ref.: #8025]	GC-content	70.7 mol%
[Ref.: #67770]	GC-content	70.7 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #8025]

Culture collection no.

DSM 19451, KCCM 42316, NRRL B-41420, JCM 14546

[Ref.: #71510]

SI-ID 297147

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brevibacterium rongguiense sp. nov., isolated from freshwater sediment.	Deng T, Lu H, Qian Y, Chen X, Yang X, Guo J, Sun G, Xu M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004379	2020	*
Phylogeny	Brevibacterium daeguense sp. nov., a nitrate-reducing bacterium isolated from a 4-chlorophenol enrichment culture.	Cui Y, Kang MS, Woo SG, Jin L, Kim KK, Park J, Lee M, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.038141-0	2012	*
Phylogeny	Brevibacterium album sp. nov., a novel actinobacterium isolated from a saline soil in China.	Tang SK, Wang Y, Schumann P, Stackebrandt E, Lou K, Jiang CL, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65183-0	2008	*
Phylogeny	Brevibacterium samyangense sp. nov., an actinomycete isolated from a beach sediment.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.64269-0	2006	*

References

#8025

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19451

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31784

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28056 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71510

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297147.1 )

#28056

IJSEM 1889 2006 ( DOI 10.1099/ijs.0.64269-0 , PubMed 16902026 )

* These data were automatically processed and therefore are not curated

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