Name: Solimonas variicoloris MN28
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 18153

Type strain:

Species: Solimonas variicoloris

Strain Designation: MN28

Culture col. no.: DSM 15731, LMG 22844, CCUG 60888

Strain history: <- M. M. Friedrich and A. Lipski, University Osnabrueck; MN28

NCBI tax ID(s): 1123256 (strain), 254408 (species)

SI-ID 135576

LMG 22844, DSM 15731, CCUG 60888

Section

Solimonas variicoloris MN28 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from hexane degrading biofilter.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Nevskiales*
	Family	*Nevskiaceae*
	Genus	*Solimonas*
	Species	**Solimonas variicoloris**
	Full Scientific Name (LPSN)	Solimonas variicoloris (Friedrich and Lipski 2008) Sheu et al. 2011

	Synonym	"Sinobacter* variicoloris"*
	Synonym	Singularimonas variicoloris

Information on morphological and physiological properties Morphology

[Ref.: #32452]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #32452]	Cell length	0.9 µm

[Ref.: #32452]	Cell width	0.6 µm

[Ref.: #32452]	Cell shape	rod-shaped

[Ref.: #62482]

Incubation period

2 days

[Ref.: #32452]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6088]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #6088]

Culture medium growth

[Ref.: #6088]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6088]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6088]	growth	30 °C
[Ref.: #32452]	growth	23-37 °C
[Ref.: #32452]	optimum	30 °C
[Ref.: #62482]	growth	30 °C

[Ref.: #6088]	Temperature range	mesophilic
[Ref.: #32452]	Temperature range	mesophilic
[Ref.: #62482]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32452]			optimum	7
[Ref.: #32452]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32452]	Oxygen tolerance	aerobe
[Ref.: #62482]	Oxygen tolerance	aerobe

[Ref.: #32452]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

[Ref.: #32452]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #32452]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #32452]	glucose ChEBI	+	carbon source
[Ref.: #32452]	glutamate ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #32452]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #32452]	succinate ChEBI	+	carbon source
[Ref.: #32452]	threonine ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE, API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32452]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #32452]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #32452]	gelatinase	+
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #62482]	8613	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #62482]	4496	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6088]	Sample type/isolated from	hexane degrading biofilter
[Ref.: #6088]	Geographic location (country and/or sea, region)	Hamm
[Ref.: #6088]	Country	Germany
[Ref.: #6088]	Country ISO 3 Code	DEU
[Ref.: #6088]	Continent	Europe

[Ref.: #62482]	Sample type/isolated from	Biofilter,industrial
[Ref.: #62482]	Sampling date	2007
[Ref.: #62482]	Geographic location (country and/or sea, region)	Hamm
[Ref.: #62482]	Country	Germany
[Ref.: #62482]	Country ISO 3 Code	DEU
[Ref.: #62482]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered

#Bioremediation

#Biofilter

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ555478 (>99% sequence identity) for Solimonas from Microbeatlas

Aquatic Samples	617
Soil Samples	394
Animal Samples	324
Plant Samples	206
Total Samples	1541

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6088]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6088]	Gamma proteobacterium MN 28 partial 16S rRNA gene, strain MN 28	AJ555478	1487	ENA	1123256 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Solimonas variicoloris DSM 15731	GCA_000382285	scaffold	GenBank	1123256 tax ID	*
[Ref.: #66792]	Singularimonas variicoloris DSM 15731	1123256.3	wgs	PATRIC	1123256 tax ID	*
[Ref.: #66792]	Solimonas variicoloris DSM 15731	2521172650	draft	JGI IMG/M	1123256 tax ID	*

[Ref.: #6088]

GC-content

64.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Solimonas variicoloris DSM 15731 DSM 15731 NCBI: GCA_000382285.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Solimonas variicoloris DSM 15731 DSM 15731 NCBI: GCA_000382285.1
[Ref.: #69480]	motile	yes	77.939	no
[Ref.: #69480]	flagellated	no	66.07	no
[Ref.: #69480]	gram-positive	no	98.9	yes
[Ref.: #69480]	anaerobic	no	99.089	no
[Ref.: #69480]	aerobic	yes	88.856	yes
[Ref.: #69480]	halophile	no	94.383	no
[Ref.: #69480]	spore-forming	no	95.781	no
[Ref.: #69480]	thermophile	no	92.342	yes
[Ref.: #69480]	glucose-util	yes	86.569	yes
[Ref.: #69480]	glucose-ferment	no	93.418	no

Availability in culture collections External links

[Ref.: #6088]

Culture collection no.

DSM 15731, LMG 22844, CCUG 60888

[Ref.: #87137]

SI-ID 135576

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal of Solimonas aquatica sp. nov., reclassification of Sinobacter flavus Zhou et al. 2008 as Solimonas flava comb. nov. and Singularimonas variicoloris Friedrich and Lipski 2008 as Solimonas variicoloris comb. nov. and emended descriptions of the genus Solimonas and its type species Solimonas soli.	Sheu SY, Cho NT, Arun AB, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.023010-0	2010	*
Phylogeny	Alkanibacter difficilis gen. nov., sp. nov. and Singularimonas variicoloris gen. nov., sp. nov., hexane-degrading bacteria isolated from a hexane-treated biofilter.	Friedrich MM, Lipski A	Int J Syst Evol Microbiol	10.1099/ijs.0.65517-0	2008	*

References

#6088

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15731

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32452

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28674 (see below)

#62482 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60888

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87137

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID135576.1 )

#28674

IJSEM 2324 2008 ( DOI 10.1099/ijs.0.65517-0 , PubMed 18842850 )

* These data were automatically processed and therefore are not curated

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Solimonas variicoloris DSM 15731 DSM 15731

Solimonas variicoloris DSM 15731 DSM 15731

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