Name: Solimonas flava CW-KD 4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 18154

Type strain:

Species: Solimonas flava

Strain Designation: CW-KD 4

Culture col. no.: DSM 18980, CCTCC AB 206145, KCTC 12881

Strain history: <- Y Zhou, Nanjing Agricultiral Univ, China

NCBI tax ID(s): 1123257 (strain), 415849 (species)

SI-ID 402783

DSM 18980

Section

Solimonas flava CW-KD 4 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from surface layer of a polluted farmland soil.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Nevskiales*
	Family	*Nevskiaceae*
	Genus	*Solimonas*
	Species	**Solimonas flava**
	Full Scientific Name (LPSN)	Solimonas flava (Zhou et al. 2008) Sheu et al. 2011

Synonym

Sinobacter flavus

Information on morphological and physiological properties Morphology

[Ref.: #32277]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.987

[Ref.: #32277]	Cell length	2.6 µm

[Ref.: #32277]	Cell width	0.45 µm

[Ref.: #32277]	Cell shape	rod-shaped

[Ref.: #32277]	Motility	no

[Ref.: #32277]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7812]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

[Ref.: #7812]

Culture medium growth

[Ref.: #7812]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7812]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7812]	growth	28 °C
[Ref.: #32277]	growth	10-35 °C
[Ref.: #32277]	optimum	27.5 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #7812]	Temperature range	mesophilic
[Ref.: #32277]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32277]			optimum	6.5
[Ref.: #32277]			growth	05-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32277]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #32277]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.985

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32277]		NaCl		growth	0-2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32277]	cellobiose ChEBI	+	carbon source
[Ref.: #32277]	glucosamine ChEBI	+	carbon source
[Ref.: #32277]	glucose ChEBI	+	carbon source
[Ref.: #32277]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32277]	ribose ChEBI	+	carbon source
[Ref.: #32277]	sucrose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32277]		cytochrome oxidase	+	1.9.3.1
[Ref.: #32277]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7812]	Sample type/isolated from	surface layer of a polluted farmland soil
[Ref.: #7812]	Geographic location (country and/or sea, region)	Jiangsu Province, Nanjing
[Ref.: #7812]	Country	China
[Ref.: #7812]	Country ISO 3 Code	CHN
[Ref.: #7812]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Jiangsu Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	-
#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF154515 (>99% sequence identity) for Solimonas from Microbeatlas

Aquatic Samples	617
Soil Samples	394
Animal Samples	324
Plant Samples	206
Total Samples	1541

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7812]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7812]	Solimonas flava DSM 18980 strain CW-KD 4 16S ribosomal RNA gene, partial sequence	EF154515	1487	ENA	1123257 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Solimonas flava DSM 18980	GCA_000426685	scaffold	GenBank	1123257 tax ID	*
[Ref.: #66792]	Sinobacter flavus DSM 18980	1123257.3	wgs	PATRIC	1123257 tax ID	*
[Ref.: #66792]	Solimonas flava DSM 18980	2526164694	draft	JGI IMG/M	1123257 tax ID	*

[Ref.: #32277]

GC-content

65.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Solimonas flava DSM 18980 DSM 18980 NCBI: GCA_000426685.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Solimonas flava DSM 18980 DSM 18980 NCBI: GCA_000426685.1
[Ref.: #69480]	motile	yes	75.375	yes
[Ref.: #69480]	flagellated	no	72	no
[Ref.: #69480]	gram-positive	no	98.793	no
[Ref.: #69480]	anaerobic	no	99.298	yes
[Ref.: #69480]	aerobic	yes	91.099	yes
[Ref.: #69480]	halophile	no	93.46	no
[Ref.: #69480]	spore-forming	no	95.601	yes
[Ref.: #69480]	glucose-util	yes	87.7	yes
[Ref.: #69480]	thermophile	no	96.418	yes
[Ref.: #69480]	glucose-ferment	no	92.732	no

Availability in culture collections External links

[Ref.: #7812]

Culture collection no.

DSM 18980, CCTCC AB 206145, KCTC 12881

[Ref.: #87138]

SI-ID 402783

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Solimonas fluminis sp. nov., isolated from a freshwater river.	Lee Y, Lee B, Lee K, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002865	2018	*
Phylogeny	Solimonas terrae sp. nov., isolated from soil.	Kim SJ, Moon JY, Weon HY, Ahn JH, Chen WM, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.055574-0	2014	*
Phylogeny	Fontimonas thermophila gen. nov., sp. nov., a moderately thermophilic bacterium isolated from a freshwater hot spring, and proposal of Solimonadaceae fam. nov. to replace Sinobacteraceae Zhou et al. 2008.	Losey NA, Stevenson BS, Verbarg S, Rudd S, Moore ERB, Lawson PA	Int J Syst Evol Microbiol	10.1099/ijs.0.037127-0	2012	*
Phylogeny	Proposal of Solimonas aquatica sp. nov., reclassification of Sinobacter flavus Zhou et al. 2008 as Solimonas flava comb. nov. and Singularimonas variicoloris Friedrich and Lipski 2008 as Solimonas variicoloris comb. nov. and emended descriptions of the genus Solimonas and its type species Solimonas soli.	Sheu SY, Cho NT, Arun AB, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.023010-0	2010	*
Phylogeny	Description of Sinobacter flavus gen. nov., sp. nov., and proposal of Sinobacteraceae fam. nov.	Zhou Y, Zhang YQ, Zhi XY, Wang X, Dong J, Chen Y, Lai R, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65244-0	2008	*

References

#7812

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18980

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32277

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28517 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87138

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402783.1 )

#28517

IJSEM 184 2008 ( DOI 10.1099/ijs.0.65244-0 , PubMed 18175707 )

* These data were automatically processed and therefore are not curated

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Solimonas flava DSM 18980 DSM 18980

Solimonas flava DSM 18980 DSM 18980

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