Name: Methanocalculus taiwanensis P2F9704a
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 18148

Type strain:

Species: Methanocalculus taiwanensis

Strain Designation: P2F9704a

Culture col. no.: DSM 14663, CCRC 16182, OCM 671

Strain history: <- M.-C. Lai, National Chung Hsing Univ., Taichnug, Taiwan; P2F9704a <- M.-C. Lai {1996}

NCBI tax ID(s): 106207 (species)

SI-ID 100747

CCRC 16182, DSM 14663, DSM 14648, BCRC 16182

Special Collections

DSMZ

Other strains from Methanocalculus taiwanensis

Section

Methanocalculus taiwanensis P2F9704a is an anaerobe, Gram-negative archaeon that was isolated from water sample.

Gram-negative
anaerobe
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	"Methanomicrobia"
	Order	*Methanomicrobiales*
	Family	*Methanocalculaceae*
	Genus	*Methanocalculus*
	Species	**Methanocalculus taiwanensis**
	Full Scientific Name (LPSN)	Methanocalculus taiwanensis Lai et al. 2002

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5470]

Culture medium

METHANOFOLLIS MB MEDIUM (5 G/L NACL) (DSMZ Medium 924a)

[Ref.: #5470]

Culture medium growth

[Ref.: #5470]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5470]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5470]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5470]

Oxygen tolerance

anaerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %92.982

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5470]	Sample type/isolated from	water sample
[Ref.: #5470]	Geographic location (country and/or sea, region)	Taiwan, Eriln Shi, estuary environment
[Ref.: #5470]	Country	China
[Ref.: #5470]	Country ISO 3 Code	CHN
[Ref.: #5470]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF172443 (>99% sequence identity) for Methanocalculus taiwanensis from Microbeatlas

Aquatic Samples	2
Soil Samples
Animal Samples
Plant Samples
Total Samples	2

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5470]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5470]	Methanocalculus taiwanensis strain P2F9704a 16S ribosomal RNA gene, partial sequence	AF172443	1369	GenBank ENA	106207 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanocalculus taiwanensis P2F9704a	GCA_024372745	contig	GenBank ENA	106207 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methanocalculus taiwanensis P2F9704a NCBI: GCA_024372745.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	72.54	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	87.968	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	89.774	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.982	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	82.174	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	84	no

Availability in culture collections External links

[Ref.: #5470]

Culture collection no.

DSM 14663, CCRC 16182, OCM 671

[Ref.: #87133]

SI-ID 100747

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methanocalculus taiwanensis sp. nov., isolated from an estuarine environment.	Lai MC, Chen SC, Shu CM, Chiou MS, Wang CC, Chuang MJ, Hong TY, Liu CC, Lai LJ, Hua JJ	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1799	2002	*
	Draft Genomes of Methanocalculus taiwanensis P2F9704a(T) and Methanocalculus chunghsingensis K1F9705b(T), Hydrogenotrophic Methanogens Belonging to the Family Methanocalculaceae.	Chen SC, Lai SJ, You YT, Shih CJ, Wu YC, Wu CH, Liao CH	Microbiol Resour Announc	10.1128/mra.00792-22	2022	*

References

#5470

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14663

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87133

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100747.1 )

* These data were automatically processed and therefore are not curated

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