Name: Methanomassiliicoccus luminyensis B10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 18149

Type strain:

Species: Methanomassiliicoccus luminyensis

Strain Designation: B10

Culture col. no.: DSM 25720, CSUR P135, JCM 31472

Strain history: DSM 25720 <-- M.-L. Fardeau; IRD-MIO, Aix-Marseille Univ., France; B10.

NCBI tax ID(s): 1080712 (species)

SI-ID 402234

DSM 25720

Section

Methanomassiliicoccus luminyensis B10 is an anaerobe, mesophilic, Gram-positive archaeon that was isolated from faeces from an 86-year-old healthy man.

coccus-shaped
Gram-positive
anaerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Thermoplasmata*
	Order	*Methanomassiliicoccales*
	Family	*Methanomassiliicoccaceae*
	Genus	*Methanomassiliicoccus*
	Species	**Methanomassiliicoccus luminyensis**
	Full Scientific Name (LPSN)	Methanomassiliicoccus luminyensis Dridi et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30335]	Gram stain	positive

[Ref.: #30335]	Cell width	0.85 µm

[Ref.: #30335]	Cell shape	coccus-shaped

[Ref.: #30335]	Motility	no

[Ref.: #18095]

Incubation period

8-14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18095]

Culture medium

METHANOMASSILIICOCCUS MEDIUM (DSMZ Medium 119b)

[Ref.: #18095]

Culture medium growth

[Ref.: #18095]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18095]

Culture medium composition

expand / minimize

[Ref.: #18095]

Culture medium

METHANOMASSILIICOCCUS LUMINYENSIS MEDIUM (DSMZ Medium 1637)

[Ref.: #18095]

Culture medium growth

[Ref.: #18095]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18095]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #18095]	growth	37 °C
[Ref.: #30335]	growth	25-45 °C
[Ref.: #30335]	optimum	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #18095]	Temperature range	mesophilic
[Ref.: #30335]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30335]			optimum	7.6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #18095]	Oxygen tolerance	anaerobe
[Ref.: #30335]	Oxygen tolerance	anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30335]		NaCl		growth	0.1-1	%
[Ref.: #30335]		NaCl		optimum	1	%

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18095]	Sample type/isolated from	faeces from an 86-year-old healthy man
[Ref.: #18095]	Geographic location (country and/or sea, region)	Marseille
[Ref.: #18095]	Country	France
[Ref.: #18095]	Country ISO 3 Code	FRA
[Ref.: #18095]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Human faeces collected in Marseille
[Ref.: #67770]	Country	France
[Ref.: #67770]	Country ISO 3 Code	FRA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	#Male

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ896499 (>99% sequence identity) for Methanomassiliicoccus from Microbeatlas

Aquatic Samples	25
Soil Samples	3
Animal Samples	8
Plant Samples	5
Total Samples	41

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18095]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18095]	Methanomassiliicoccus luminyensis strain B10 16S ribosomal RNA gene, partial sequence	HQ896499	1434	ENA	1175296 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Methanomassiliicoccus luminyensis B10	GCA_000308215	contig	GenBank	1175296 tax ID
[Ref.: #66792]	Methanomassiliicoccus luminyensis B10	2518645582	draft	JGI IMG/M	1175296 tax ID	*
[Ref.: #66792]	Methanomassiliicoccus luminyensis B10	1175296.12	wgs	PATRIC	1175296 tax ID	*

[Ref.: #18095]	GC-content	59.93 mol%	sequence analysis
[Ref.: #30335]	GC-content	59.93 mol%
[Ref.: #67770]	GC-content	59.93 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #18095]

Culture collection no.

DSM 25720, CSUR P135, JCM 31472

[Ref.: #87134]

SI-ID 402234

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces.	Dridi B, Fardeau ML, Ollivier B, Raoult D, Drancourt M	Int J Syst Evol Microbiol	10.1099/ijs.0.033712-0	2012	*
Genetics	Complete genome sequence of Methanomassiliicoccus luminyensis, the largest genome of a human-associated Archaea species.	Gorlas A, Robert C, Gimenez G, Drancourt M, Raoult D	J Bacteriol	10.1128/JB.00956-12	2012	*

References

#18095

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25720

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30335

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26676 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87134

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402234.1 )

#26676

IJSEM 1902 2012 ( DOI 10.1099/ijs.0.033712-0 , PubMed 22859731 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Methanomassiliicoccus luminyensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF