Name: Bryobacter aggregatus DSM 18758
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 18092

Type strain:

Species: Bryobacter aggregatus

Culture col. no.: DSM 18758, ATCC BAA-1390, MPL 3

Strain history: <- S. N. Dedysh, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; MPL3 <- I. S. Kulichevskaya

NCBI tax ID(s): 360054 (species)

SI-ID 405796

DSM 18758

Special Collections

Section

Bryobacter aggregatus DSM 18758 is a Gram-negative, coccus-shaped bacterium that was isolated from Sphagnum peat bog, soil at a depth of 10–20 cm.

coccus-shaped
Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Acidobacteriota*
	Class	*Terriglobia*
	Order	*Bryobacterales*
	Family	*Bryobacteraceae*
	Genus	*Bryobacter*
	Species	**Bryobacter aggregatus**
	Full Scientific Name (LPSN)	Bryobacter aggregatus Kulichevskaya et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29445]	Gram stain	negative

[Ref.: #29445]	Cell length	1.05 µm

[Ref.: #29445]	Cell width	0.65 µm

[Ref.: #29445]	Cell shape	coccus-shaped

[Ref.: #29445]	Motility	no

[Ref.: #7605]

Incubation period

8-14 days

[Ref.: #29445]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7605]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7605]

Culture medium growth

[Ref.: #7605]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7605]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7605]	growth	28 °C
[Ref.: #29445]	growth	04-33 °C
[Ref.: #29445]	optimum	25 °C

	pH	Kind of pH		pH
[Ref.: #29445]			optimum	6
[Ref.: #29445]			growth	4.5-7.2

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29445]		NaCl		growth	<1.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29445]	cellobiose ChEBI	+	carbon source
[Ref.: #29445]	esculin ChEBI	+	hydrolysis
[Ref.: #29445]	fructose ChEBI	+	carbon source
[Ref.: #29445]	galactose ChEBI	+	carbon source
[Ref.: #29445]	galacturonate ChEBI	+	carbon source
[Ref.: #29445]	glucose ChEBI	+	carbon source
[Ref.: #29445]	lactose ChEBI	+	carbon source
[Ref.: #29445]	maltose ChEBI	+	carbon source
[Ref.: #29445]	mannose ChEBI	+	carbon source
[Ref.: #29445]	melibiose ChEBI	+	carbon source
[Ref.: #29445]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29445]	raffinose ChEBI	+	carbon source
[Ref.: #29445]	rhamnose ChEBI	+	carbon source
[Ref.: #29445]	ribose ChEBI	+	carbon source
[Ref.: #29445]	salicin ChEBI	+	carbon source
[Ref.: #29445]	sucrose ChEBI	+	carbon source
[Ref.: #29445]	trehalose ChEBI	+	carbon source
[Ref.: #29445]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29445]	acid phosphatase	+	3.1.3.2
[Ref.: #29445]	alkaline phosphatase	+	3.1.3.1
[Ref.: #7605]	catalase	+	1.11.1.6
[Ref.: #29445]	catalase	+	1.11.1.6
[Ref.: #29445]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7605]	Sample type/isolated from	Sphagnum peat bog, soil (pH 4.0) at a depth of 10–20 cm
[Ref.: #7605]	Host species	Sphagnum
[Ref.: #7605]	Geographic location (country and/or sea, region)	West Siberia, Tomsk region, Bakchar Bog (56° 51' N 82° 50' E)
[Ref.: #7605]	Country	Russia
[Ref.: #7605]	Country ISO 3 Code	RUS
[Ref.: #7605]	Continent	Asia
[Ref.: #7605]	Geographic location	56.8500°/82.8333°
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Peat moss

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM162405 (>99% sequence identity) for Bryobacter aggregatus subclade from Microbeatlas

Aquatic Samples	1954
Soil Samples	2550
Animal Samples	5667
Plant Samples	201
Total Samples	10372

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7605]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7605]	Bryobacter aggregatus partial 16S rRNA gene, type strain MPL3T	AM162405	1391	GenBank ENA	1340493 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bryobacter aggregatus DSM 18758	2562617048	draft	JGI IMG/M	1340493 tax ID	*

[Ref.: #29445]

GC-content

55.5-56.5 mol%

Availability in culture collections External links

[Ref.: #7605]

Culture collection no.

DSM 18758, ATCC BAA-1390, MPL 3

[Ref.: #87080]

SI-ID 405796

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bryobacter aggregatus gen. nov., sp. nov., a peat-inhabiting, aerobic chemo-organotroph from subdivision 3 of the Acidobacteria.	Kulichevskaya IS, Suzina NE, Liesack W, Dedysh SN	Int J Syst Evol Microbiol	10.1099/ijs.0.013250-0	2009	*

References

#7605

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18758

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29445

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25851 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87080

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405796.1 )

#25851

IJSEM 301 2010 ( DOI 10.1099/ijs.0.013250-0 , PubMed 19651730 )

* These data were automatically processed and therefore are not curated

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