Strain identifier

BacDive ID: 18092

Type strain: Yes

Species: Bryobacter aggregatus

Strain history: <- S. N. Dedysh, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; MPL3 <- I. S. Kulichevskaya

NCBI tax ID(s): 360054 (species)

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General

@ref: 7605

BacDive-ID: 18092

DSM-Number: 18758

keywords: genome sequence, 16S sequence, Bacteria, Gram-negative, coccus-shaped

description: Bryobacter aggregatus DSM 18758 is a Gram-negative, coccus-shaped bacterium that was isolated from Sphagnum peat bog, soil at a depth of 10–20 cm.

NCBI tax id

  • NCBI tax id: 360054
  • Matching level: species

strain history

  • @ref: 7605
  • history: <- S. N. Dedysh, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; MPL3 <- I. S. Kulichevskaya

doi: 10.13145/bacdive18092.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/acidobacteriota
  • domain: Bacteria
  • phylum: Acidobacteriota
  • class: Terriglobia
  • order: Bryobacterales
  • family: Bryobacteraceae
  • genus: Bryobacter
  • species: Bryobacter aggregatus
  • full scientific name: Bryobacter aggregatus Kulichevskaya et al. 2010

@ref: 7605

domain: Bacteria

phylum: Acidobacteria

class: Acidobacteriia

order: Acidobacteria, not assigned to order

family: Bryobacteraceae

genus: Bryobacter

species: Bryobacter aggregatus

full scientific name: Bryobacter aggregatus Kulichevskaya et al. 2010

type strain: yes

Morphology

cell morphology

  • @ref: 29445
  • gram stain: negative
  • cell length: 1.05 µm
  • cell width: 0.65 µm
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 7605
  • incubation period: 8-14 days

pigmentation

  • @ref: 29445
  • production: no

Culture and growth conditions

culture medium

  • @ref: 7605
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperature
7605positivegrowth28
29445positivegrowth04-33
29445positiveoptimum25

culture pH

@refabilitytypepH
29445positivegrowth4.5-7.2
29445positiveoptimum6

Physiology and metabolism

halophily

  • @ref: 29445
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <1.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2944517057cellobiose+carbon source
2944528757fructose+carbon source
2944528260galactose+carbon source
2944524175galacturonate+carbon source
2944517234glucose+carbon source
2944517716lactose+carbon source
2944517306maltose+carbon source
2944537684mannose+carbon source
2944528053melibiose+carbon source
29445506227N-acetylglucosamine+carbon source
2944516634raffinose+carbon source
2944526546rhamnose+carbon source
2944533942ribose+carbon source
2944517814salicin+carbon source
2944517992sucrose+carbon source
2944527082trehalose+carbon source
2944518222xylose+carbon source
294454853esculin+hydrolysis

enzymes

@refvalueactivityec
7605catalase+1.11.1.6
29445acid phosphatase+3.1.3.2
29445alkaline phosphatase+3.1.3.1
29445catalase+1.11.1.6
29445gelatinase+

Isolation, sampling and environmental information

isolation

  • @ref: 7605
  • sample type: Sphagnum peat bog, soil (pH 4.0) at a depth of 10–20 cm
  • host species: Sphagnum
  • geographic location: West Siberia, Tomsk region, Bakchar Bog (56° 51' N 82° 50' E)
  • country: Russia
  • origin.country: RUS
  • continent: Asia
  • latitude: 56.85
  • longitude: 82.8333

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Peat moss

taxonmaps

  • @ref: 69479
  • File name: preview.99_2687.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_290;96_1432;97_1708;98_2084;99_2687&stattab=map
  • Last taxonomy: Bryobacter aggregatus subclade
  • 16S sequence: AM162405
  • Sequence Identity:
  • Total samples: 10372
  • soil counts: 2550
  • aquatic counts: 1954
  • animal counts: 5667
  • plant counts: 201

Safety information

risk assessment

  • @ref: 7605
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7605
  • description: Bryobacter aggregatus partial 16S rRNA gene, type strain MPL3T
  • accession: AM162405
  • length: 1391
  • database: nuccore
  • NCBI tax ID: 1340493

Genome sequences

  • @ref: 66792
  • description: Bryobacter aggregatus DSM 18758
  • accession: 2562617048
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1340493

GC content

  • @ref: 29445
  • GC-content: 55.5-56.5

External links

@ref: 7605

culture collection no.: DSM 18758, ATCC BAA-1390, MPL 3

straininfo link

  • @ref: 87080
  • straininfo: 405796

literature

  • topic: Phylogeny
  • Pubmed-ID: 19651730
  • title: Bryobacter aggregatus gen. nov., sp. nov., a peat-inhabiting, aerobic chemo-organotroph from subdivision 3 of the Acidobacteria.
  • authors: Kulichevskaya IS, Suzina NE, Liesack W, Dedysh SN
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.013250-0
  • year: 2009
  • mesh: Base Composition, Base Sequence, DNA, Bacterial/chemistry, Gram-Negative Aerobic Bacteria/*classification/genetics/ultrastructure, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Siberia, *Soil Microbiology, Sphagnopsida/*microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7605Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18758)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18758
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29445Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2585128776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
87080Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID405796.1StrainInfo: A central database for resolving microbial strain identifiers