Name: Thermoanaerobacterium xylanolyticum LX-11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 18051

Type strain:

Species: Thermoanaerobacterium xylanolyticum

Strain Designation: LX-11

Culture col. no.: DSM 7097

Strain history: <- J.G. Zeikus <- Y.-E. Lee, LX 11

NCBI tax ID(s): 858215 (strain), 29329 (species)

SI-ID 48364

DSM 7097, ATCC 49914

Section

Thermoanaerobacterium xylanolyticum LX-11 is an anaerobe, spore-forming, thermophilic bacterium that forms circular colonies and was isolated from thermal spring.

colony-forming
Gram-negative
motile
rod-shaped
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Thermoanaerobacterales*
	Family	*Thermoanaerobacteraceae*
	Genus	*Thermoanaerobacterium*
	Species	**Thermoanaerobacterium xylanolyticum**
	Full Scientific Name (LPSN)	Thermoanaerobacterium xylanolyticum Lee et al. 1993

Information on morphological and physiological properties Morphology

[Ref.: #43366]	Gram stain	negative

[Ref.: #43366]	Cell length	2-7 µm

[Ref.: #43366]	Cell width	0.8-1 µm

[Ref.: #43366]	Cell shape	rod-shaped

[Ref.: #43366]	Motility	yes

[Ref.: #43366]	Colony size	2-5 mm
[Ref.: #43366]	Colony color	cloudy to white
[Ref.: #43366]	Colony shape	circular

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2983]

Culture medium

THERMOANAEROBACTER BROCKII MEDIUM (DSMZ Medium 144)

[Ref.: #2983]

Culture medium growth

[Ref.: #2983]

Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #2983]	growth	60 °C
[Ref.: #43366]	optimum	60 °C
[Ref.: #43366]	growth	45-70 °C

[Ref.: #2983]	Temperature range	thermophilic
[Ref.: #43366]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #43366]			optimum	6
[Ref.: #43366]			growth	5-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2983]	Oxygen tolerance	anaerobe
[Ref.: #43366]	Oxygen tolerance	anaerobe

[Ref.: #43366]	Spore description	terminal spore, remained within the mother cell rather than free in the solution
[Ref.: #43366]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43366]		NaCl	no	growth	1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43366]	arabinose ChEBI	+	assimilation
[Ref.: #43366]	cellobiose ChEBI	+	assimilation
[Ref.: #43366]	cellulose ChEBI	-	fermentation
[Ref.: #43366]	fructose ChEBI	+	assimilation
[Ref.: #43366]	galactose ChEBI	+	assimilation
[Ref.: #43366]	glucose ChEBI	+	assimilation
[Ref.: #43366]	lactate ChEBI	-	fermentation
[Ref.: #43366]	lactose ChEBI	+	assimilation
[Ref.: #43366]	maltose ChEBI	+	assimilation
[Ref.: #43366]	mannitol ChEBI	+	assimilation
[Ref.: #43366]	mannose ChEBI	+	assimilation
[Ref.: #43366]	melezitose ChEBI	-	fermentation
[Ref.: #43366]	melibiose ChEBI	-	fermentation
[Ref.: #43366]	pyruvate ChEBI	+	assimilation
[Ref.: #43366]	raffinose ChEBI	-	fermentation
[Ref.: #43366]	rhamnose ChEBI	+	assimilation
[Ref.: #43366]	ribose ChEBI	-	fermentation
[Ref.: #43366]	starch ChEBI	+	assimilation
[Ref.: #43366]	sucrose ChEBI	+	assimilation
[Ref.: #43366]	xylan ChEBI	+	assimilation
[Ref.: #43366]	xylitol ChEBI	-	fermentation
[Ref.: #43366]	xylose ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #43366]	acridine orange ChEBI	yes	100	µg/mL
[Ref.: #43366]	ampicillin ChEBI	yes	100	µg/mL
[Ref.: #43366]	erythromycin ChEBI	yes	100	µg/mL
[Ref.: #43366]	neomycin ChEBI	yes	100	µg/mL
[Ref.: #43366]	penicillin g ChEBI	yes	200	µg/mL
[Ref.: #43366]	polymyxin b ChEBI	yes	100	µg/mL
[Ref.: #43366]	rifampicin ChEBI	yes	100	µg/mL
[Ref.: #43366]	streptomycin ChEBI	yes	100	µg/mL
[Ref.: #43366]	tetracycline ChEBI	yes	100	µg/mL

	Metabolite	Production
[Ref.: #43366]	acetate ChEBI	yes
[Ref.: #43366]	carbon dioxide ChEBI	yes
[Ref.: #43366]	dihydrogen ChEBI	yes
[Ref.: #43366]	ethanol ChEBI	yes

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #43366]		catalase	-	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2983]	Sample type/isolated from	thermal spring
[Ref.: #2983]	Geographic location (country and/or sea, region)	Wyoming, Yellowstone Natl. Park
[Ref.: #2983]	Country	USA
[Ref.: #2983]	Country ISO 3 Code	USA
[Ref.: #2983]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2983]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Thermoanaerobacterium xylanolyticum LX-11 strain LX-II 16S ribosomal RNA gene, partial sequence	L09172	1581	ENA	29329 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermoanaerobacterium xylanolyticum LX-11	GCA_000189775	complete	GenBank	858215 tax ID	*
[Ref.: #66792]	Thermoanaerobacterium xylanolyticum LX-11	858215.3	wgs	PATRIC	858215 tax ID	*
[Ref.: #66792]	Thermoanaerobacterium xylanolyticum LX-11, DSM 7097	650716095	complete	JGI IMG/M	858215 tax ID	*

[Ref.: #2983]	GC-content	36.0 mol%
[Ref.: #43366]	GC-content	36.1 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermoanaerobacterium xylanolyticum LX-11 LX-11 NCBI: GCA_000189775.3
[Ref.: #69480]	motile	yes	86.62	yes
[Ref.: #69480]	flagellated	no	81.831	no
[Ref.: #69480]	gram-positive	no	68.43	yes
[Ref.: #69480]	anaerobic	yes	99.285	yes
[Ref.: #69480]	aerobic	no	99.193	yes
[Ref.: #69480]	halophile	no	94.619	no
[Ref.: #69480]	spore-forming	yes	95.431	yes
[Ref.: #69480]	glucose-util	yes	90.503	yes
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-ferment	yes	68.072	no

Availability in culture collections External links

[Ref.: #2983]

Culture collection no.

DSM 7097

[Ref.: #87040]

SI-ID 48364

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequence of Thermoanaerobacterium sp. strain PSU-2 isolated from thermophilic hydrogen producing reactor.	O-Thong S, Khongkliang P, Mamimin C, Singkhala A, Prasertsan P, Birkeland NK	Genom Data	10.1016/j.gdata.2017.02.012	2017	*

References

#2983

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7097

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#43366

Yong-Eok Lee, Mahendra K. Jain, Chanyong Lee. Susan E. Lowe, J. Gregory Zeikus: Taxonomic Distinction of Saccharolytic Thermophilic Anaerobes: Description of Thermoanaerobacterium xylanolyticum gen. nov. , sp nov., and Thermoanaerobacterium saccharolyticum gen. nov., sp. nov.; Reclassification of Thermoanaerobium brockii, Clostridium thermosulfurogenes, and Clostridium thermohydrosulfiricum ElO0-69 as Thermoanaerobacter brockii comb. nov., Thermoanaerobacterium thermosulfurigenes comb. nov., and Thermoanaerobacter thermohydrosulfuricus comb. nov., Respectively; and Transfer of Clostridium thermohydrosulfuricum 39E to Thermoanaerobacter ethanolicus. IJSEM 43: 41 - 51 1993 ( DOI 10.1099/00207713-43-1-41 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87040

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48364.1 )

* These data were automatically processed and therefore are not curated

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Thermoanaerobacterium xylanolyticum LX-11 LX-11

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