Name: Peptoniphilus olsenii DSM 21460
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 18003

Type strain:

Species: Peptoniphilus olsenii

Culture col. no.: DSM 21460, ATCC BAA-1384, CCUG 53342, WAL 12922, JCM 15635, KCTC 5948

Strain history: <- CCUG <- Yuli Song, VAMC, Los Angeles, CA, USA

NCBI tax ID(s): 411570 (species)

SI-ID 298328

ATCC BAA-1384, CCUG 53342, DSM 21460, JCM 15635

Special Collections

Other strains from Peptoniphilus olsenii

Section

Peptoniphilus olsenii DSM 21460 is an anaerobe, coccus-shaped bacterium that was isolated from clinical human specimen, toe.

coccus-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptoniphilaceae*
	Genus	*Peptoniphilus*
	Species	**Peptoniphilus olsenii**
	Full Scientific Name (LPSN)	Peptoniphilus olsenii Song et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Cell shape	coccus-shaped

[Ref.: #59872]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15719]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #15719]

Culture medium growth

[Ref.: #15719]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15719]

Culture medium composition

expand / minimize

[Ref.: #15719]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #15719]

Culture medium growth

[Ref.: #15719]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15719]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15719]	growth	37 °C
[Ref.: #59872]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #15719]	Oxygen tolerance	anaerobe
[Ref.: #59872]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe

[Ref.: #67771]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #15719]	12739	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+/-	+/-	-	+/-	+/-	-	+	-	+
[Ref.: #15719]	12738	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	+/-	+/-	-	+/-	-	+/-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15719]	Sample type/isolated from	clinical human specimen, toe
[Ref.: #15719]	Geographic location (country and/or sea, region)	Los Angeles, California
[Ref.: #15719]	Country	USA
[Ref.: #15719]	Country ISO 3 Code	USA
[Ref.: #15719]	Continent	North America

[Ref.: #59872]	Sample type/isolated from	Human tissue,toe
[Ref.: #59872]	Sampling date	1995-03-07
[Ref.: #59872]	Geographic location (country and/or sea, region)	California,Los Angeles
[Ref.: #59872]	Country	USA
[Ref.: #59872]	Country ISO 3 Code	USA
[Ref.: #59872]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Human clinical specimens

[Ref.: #67771]	Sample type/isolated from	From clinical human specimen, toe
[Ref.: #67771]	Geographic location (country and/or sea, region)	Los Angeles
[Ref.: #67771]	Country	USA
[Ref.: #67771]	Country ISO 3 Code	USA
[Ref.: #67771]	Continent	North America
* marker position based on {}

Isolation sources categories

#Infection	#Medical environment	#Clinic
#Infection	#Patient	#Specimen
#Host	#Human	-
#Host Body-Site	#Limb	#Foot

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ911242 (>99% sequence identity) for Peptoniphilus from Microbeatlas

Aquatic Samples	97
Soil Samples	134
Animal Samples	3606
Plant Samples	29
Total Samples	3866

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15719]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15719]	Peptoniphilus sp. WAL 12922 16S ribosomal RNA gene, partial sequence	DQ911242	1392	GenBank ENA	411570 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Peptoniphilus olsenii DSM 21460	2928410127	draft	JGI IMG/M	411570 tax ID	*

Availability in culture collections External links

[Ref.: #15719]

Culture collection no.

DSM 21460, ATCC BAA-1384, CCUG 53342, WAL 12922, JCM 15635, KCTC 5948

[Ref.: #86990]

SI-ID 298328

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Peptoniphilus gorbachii sp. nov., Peptoniphilus olsenii sp. nov., and Anaerococcus murdochii sp. nov. isolated from clinical specimens of human origin.	Song Y, Liu C, Finegold SM	J Clin Microbiol	10.1128/JCM.00213-07	2007	*

References

#15719

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21460

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#59872 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53342

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86990

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID298328.1 )

* These data were automatically processed and therefore are not curated

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