Name: Rhodoblastus acidophilus 10050
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1800

Type strain:

Species: Rhodoblastus acidophilus

Strain Designation: 10050

Culture col. no.: DSM 145, Pfennig 10050

Strain history: <- N. Pfennig, 10050

NCBI tax ID(s): 1074 (species)

SI-ID 4903

LMG 4303, DSM 145

Special Collections

DSMZ

Other strains from Rhodoblastus acidophilus

Section

Rhodoblastus acidophilus 10050 is an anaerobe bacterium that was isolated from cranberry bog.

anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Roseiarcaceae*
	Genus	*Rhodoblastus*
	Species	**Rhodoblastus acidophilus**
	Full Scientific Name (LPSN)	Rhodoblastus acidophilus (Pfennig 1969) Imhoff 2001

Synonym

Rhodopseudomonas acidophila

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2118]

Culture medium

ACID RHODOSPIRILLACEAE MEDIUM (DSMZ Medium 26)

[Ref.: #2118]

Culture medium growth

[Ref.: #2118]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2118]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2118]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2118]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2118]	Sample type/isolated from	cranberry bog
[Ref.: #2118]	Country	USA
[Ref.: #2118]	Country ISO 3 Code	USA
[Ref.: #2118]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN408835 (>99% sequence identity) for Rhodoblastus acidophilus subclade from Microbeatlas

Aquatic Samples	693
Soil Samples	758
Animal Samples	211
Plant Samples	205
Total Samples	1867

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2118]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Rhodoblastus acidophilus strain DSM145 16S ribosomal RNA gene, partial sequence	JN408835	1427	GenBank ENA	1074 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodoblastus acidophilus DSM 145	2838081316	draft	JGI IMG/M	1074 tax ID	*

Availability in culture collections External links

[Ref.: #2118]

Culture collection no.

DSM 145, Pfennig 10050

[Ref.: #71447]

SI-ID 4903

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Ultrafast energy transfer between self-assembled fluorophore and photosynthetic light-harvesting complex 2 (LH2) in lipid bilayer.	Yoneda Y, Kito M, Mori D, Goto A, Kondo M, Miyasaka H, Nagasawa Y, Dewa T	J Chem Phys	10.1063/5.0077910	2022	*
Genetics	Extension of Light-Harvesting Ability of Photosynthetic Light-Harvesting Complex 2 (LH2) through Ultrafast Energy Transfer from Covalently Attached Artificial Chromophores.	Yoneda Y, Noji T, Katayama T, Mizutani N, Komori D, Nango M, Miyasaka H, Itoh S, Nagasawa Y, Dewa T	J Am Chem Soc	10.1021/jacs.5b08508	2015	*
Phylogeny	[Formation of 55-kDa Fragments under Impaired Coordination Bonds and Hydrophobic Interactions in Peripheral Light-Harvesting Complexes Isolated from Photosynthetic Purple Bacteria].	Solov'ev AA, Erokhin YE	Mikrobiologiia		2015	*
Metabolism	Does the reconstitution of RC-LH1 complexes from Rhodopseudomonas acidophila strain 10050 into a phospholipid bilayer yield the optimum environment for optical spectroscopy?	Bohm PS, Kunz R, Southall J, Cogdell RJ, Kohler J	J Phys Chem B	10.1021/jp409980k	2013	*
Metabolism	Single-molecule spectroscopy on RC-LH1 complexes of Rhodopseudomonas acidophila strain 10050.	Bohm PS, Southall J, Cogdell RJ, Kohler J	J Phys Chem B	10.1021/jp4005218	2013	*
Phylogeny	The electronically excited states of LH2 complexes from Rhodopseudomonas acidophila strain 10050 studied by time-resolved spectroscopy and dynamic Monte Carlo simulations. I. Isolated, non-interacting LH2 complexes.	Pflock TJ, Oellerich S, Southall J, Cogdell RJ, Ullmann GM, Kohler J	J Phys Chem B	10.1021/jp202353c	2011	*
Enzymology	Excitation-emission polarization spectroscopy of single light harvesting complexes.	Tubasum S, Cogdell RJ, Scheblykin IG, Pullerits T	J Phys Chem B	10.1021/jp107480x	2011	*
Metabolism	Probing the effect of the binding site on the electrostatic behavior of a series of carotenoids reconstituted into the light-harvesting 1 complex from purple photosynthetic bacterium Rhodospirillum rubrum detected by stark spectroscopy.	Nakagawa K, Suzuki S, Fujii R, Gardiner AT, Cogdell RJ, Nango M, Hashimoto H	J Phys Chem B	10.1021/jp801773j	2008	*
Enzymology	Cloning, sequencing and analysis of the pucC genes from Rubrivivax gelatinosus strain 151 and Rhodopseudomonas acidophila strain 10050.	Simmons AE, Barrett SJ, Hunter CN, Cogdell RJ	Photosynth Res	10.1023/A:1006403901559	2000	*
Genetics	Residual backbone and side-chain 13C and 15N resonance assignments of the intrinsic transmembrane light-harvesting 2 protein complex by solid-state Magic Angle Spinning NMR spectroscopy.	Gammeren AJ, Hulsbergen FB, Hollander JG, Groot HJ	J Biomol NMR	10.1007/s10858-005-1604-8	2005	*
Stress	Fluorescence spectral fluctuations of single LH2 complexes from Rhodopseudomonas acidophila strain 10050.	Rutkauskas D, Novoderezkhin V, Cogdell RJ, van Grondelle R	Biochemistry	10.1021/bi0497648	2004	*
Genetics	Membrane protein stability: high pressure effects on the structure and chromophore-binding properties of the light-harvesting complex LH2.	Gall A, Ellervee A, Sturgis JN, Fraser NJ, Cogdell RJ, Freiberg A, Robert B	Biochemistry	10.1021/bi0350351	2003	*
Phylogeny	The ring structure and organization of light harvesting 2 complexes in a reconstituted lipid bilayer, resolved by atomic force microscopy.	Stamouli A, Kafi S, Klein DC, Oosterkamp TH, Frenken JW, Cogdell RJ, Aartsma TJ	Biophys J	10.1016/S0006-3495(03)75053-X	2003	*
Stress	The structure and thermal motion of the B800-850 LH2 complex from Rps.acidophila at 2.0A resolution and 100K: new structural features and functionally relevant motions.	Papiz MZ, Prince SM, Howard T, Cogdell RJ, Isaacs NW	J Mol Biol	10.1016/s0022-2836(03)00024-x	2003	*
Phylogeny	Detergent structure in crystals of the integral membrane light-harvesting complex LH2 from Rhodopseudomonas acidophila strain 10050.	Prince SM, Howard TD, Myles DA, Wilkinson C, Papiz MZ, Freer AA, Cogdell RJ, Isaacs NW	J Mol Biol	10.1016/s0022-2836(02)01361-x	2003	*
Metabolism	Rhodopseudomonas acidophila strain 10050 contains photosynthetic LH2 antenna complexes that are not enriched with phosphatidylglycerol, and the phospholipids have a fatty acyl composition that is unusual for purple non-sulfur bacteria.	Russell NJ, Coleman JK, Howard TD, Johnston E, Cogdell RJ	Biochim Biophys Acta	10.1016/s0005-2728(02)00369-9	2002	*
Enzymology	Efficient energy transfer from the carotenoid S(2) state in a photosynthetic light-harvesting complex.	Macpherson AN, Arellano JB, Fraser NJ, Cogdell RJ, Gillbro T	Biophys J	10.1016/S0006-3495(01)76071-7	2001	*
Metabolism	Selective release, removal, and reconstitution of bacteriochlorophyll a molecules into the B800 sites of LH2 complexes from Rhodopseudomonas acidophila 10050.	Fraser NJ, Dominy PJ, Ucker B, Simonin I, Scheer H, Cogdell RJ	Biochemistry	10.1021/bi990796i	1999	*
Enzymology	Derivative manipulation in the structure solution of the integral membrane LH2 complex.	Prince SM, McDermott G, Freer AA, Papiz MZ, Lawless AM, Cogdell RJ, Isaacs NW	Acta Crystallogr D Biol Crystallogr	10.1107/s0907444999006514	1999	*
Metabolism	Bacteriochlorin-protein interactions in native B800-B850, B800 deficient and B800-Bchla(p)-reconstituted complexes from Rhodopseudomonas acidophila, strain 10050.	Gall A, Fraser NJ, Bellissent-Funel MC, Scheer H, Robert B, Cogdell RJ	FEBS Lett	10.1016/s0014-5793(99)00410-x	1999	*
Genetics	The synthesis and assembly of functional high and low light LH2 antenna complexes from Rhodopseudomonas palustris in Rhodobacter sphaeroides.	Fowler GJ, Hunter CN	J Biol Chem	10.1074/jbc.271.23.13356	1996	*
Genetics	Deletion of a B800-850 light-harvesting complex in Rhodospirillum molischianum DSM119 leads to "revertants" expressing a B800-820 complex: insights into pigment binding.	Sauer PR, Lottspeich F, Unger E, Mentele R, Michel H	Biochemistry	10.1021/bi9528255	1996	*
Metabolism	Pigment-pigment interactions and energy transfer in the antenna complex of the photosynthetic bacterium Rhodopseudomonas acidophila.	Freer A, Prince S, Sauer K, Papiz M, Hawthornthwaite-Lawless A, McDermott G, Cogdell R, Isaacs NW	Structure	10.1016/s0969-2126(96)00050-0	1996	*
Enzymology	A progress report on the crystallographic studies on the B800-850 antenna complex from Rhodopseudomonas acidophila strain 10050.	Cogdell RJ, Halloren E, Hawthornthwaite AM, Thunnissen MM, Freer AA, McDermott G, Guthrie N, Isaacs N, Lindsay JG, Papiz M	Biochem Soc Trans	10.1042/bst0210039	1993	*
Enzymology	Structural aspects of the dye-linked alcohol dehydrogenase of Rhodopseudomonas acidophila.	Bamforth CW, Quayle JR	Biochem J	10.1042/bj1810517	1979	*
Enzymology	The dye-linked alcohol dehydrogenase of Rhodopseudomonas acidophila. Comparison with dye-linked methanol dehydrogenases.	Bamforth CW, Quayle JR	Biochem J	10.1042/bj1690677	1978	*
Metabolism	Metabolism of methanol by Rhodopseudomonas acidophila.	Sahm H, Cox RB, Quayle JR	J Gen Microbiol	10.1099/00221287-94-2-313	1976	*
Metabolism	Utilization of methanol by rhodospirillaceae.	Quayle JR, Pfennig N	Arch Microbiol	10.1007/BF00428368	1975	*
	Vibrational Modes Promoting Exciton Relaxation in the B850 Band of LH2.	Kim J, Nguyen-Phan TC, Gardiner AT, Yoon TH, Cogdell RJ, Cho M, Scholes GD	J Phys Chem Lett	10.1021/acs.jpclett.1c03868	2022	*
	The electronically excited states of LH2 complexes from Rhodopseudomonas acidophila strain 10050 studied by time-resolved spectroscopy and dynamic Monte Carlo simulations. II. Homo-arrays of LH2 complexes reconstituted into phospholipid model membranes.	Pflock TJ, Oellerich S, Krapf L, Southall J, Cogdell RJ, Ullmann GM, Kohler J	J Phys Chem B	10.1021/jp2023583	2011	*
	Selective chemical shift assignment of bacteriochlorophyll a in uniformly [13C-15N]-labeled light-harvesting 1 complexes by solid-state NMR in ultrahigh magnetic field.	Pandit A, Buda F, van Gammeren AJ, Ganapathy S, de Groot HJ	J Phys Chem B	10.1021/jp100688u	2010	*
	Single-molecule spectroscopic characterization of light-harvesting 2 complexes reconstituted into model membranes.	Richter MF, Baier J, Cogdell RJ, Kohler J, Oellerich S	Biophys J	10.1529/biophysj.106.103606	2007	*
	Biosynthetic site-specific (13) C labeling of the light-harvesting 2 protein complex: a model for solid state NMR structure determination of transmembrane proteins.	van Gammeren AJ, Hulsbergen FB, Hollander JG, de Groot HJ	J Biomol NMR	10.1007/s10858-004-3736-7	2004	*
	Selective chemical shift assignment of B800 and B850 bacteriochlorophylls in uniformly [13C,15N]-labeled light-harvesting complexes by solid-state NMR spectroscopy at ultra-high magnetic field.	van Gammeren AJ, Buda F, Hulsbergen FB, Kiihne S, Hollander JG, Egorova-Zachernyuk TA, Fraser NJ, Cogdell RJ, de Groot HJ	J Am Chem Soc	10.1021/ja044215a	2005	*
	The crystallographic structure of the B800-820 LH3 light-harvesting complex from the purple bacteria Rhodopseudomonas acidophila strain 7050.	McLuskey K, Prince SM, Cogdell RJ, Isaacs NW	Biochemistry	10.1021/bi010309a	2001	*
	Probing the binding sites of exchanged chlorophyll a in LH2 by Raman and site-selection fluorescence spectroscopies.	Gall A, Robert B, Cogdell RJ, Bellissent-Funel MC, Fraser NJ	FEBS Lett	10.1016/s0014-5793(01)02161-5	2001	*
	B800-->B850 energy transfer mechanism in bacterial LH2 complexes investigated by B800 pigment exchange.	Herek JL, Fraser NJ, Pullerits T, Martinsson P, Polivka T, Scheer H, Cogdell RJ, Sundstrom V	Biophys J	10.1016/S0006-3495(00)76803-2	2000	*
	Uphill energy transfer in LH2-containing purple bacteria at room temperature	Trissl HW, Law CJ, Cogdell RJ	Biochim Biophys Acta	10.1016/s0005-2728(99)00056-0	1999	*
	Apoprotein structure in the LH2 complex from Rhodopseudomonas acidophila strain 10050: modular assembly and protein pigment interactions.	Prince SM, Papiz MZ, Freer AA, McDermott G, Hawthornthwaite-Lawless AM, Cogdell RJ, Isaacs NW	J Mol Biol	10.1006/jmbi.1997.0966	1997	*
	The effect of growth conditions on the light-harvesting apparatus in Rhodopseudomonas acidophila.	Gardiner AT, Cogdell RJ, Takaichi S	Photosynth Res	10.1007/BF00146415	1993	*
	Absorption and linear dichroism spectroscopy at room and low temperatures of single crystals of the B800-850 light-harvesting complex from Rhodopseudomonas acidophila strain 10050.	Frank HA, Aldema ML, Parot PH, Cogdell RJ	Photosynth Res	10.1007/BF00047080	1990	*
	Crystallization and characterization of two crystal forms of the B800-850 light-harvesting complex from Rhodopseudomonas acidophila strain 10050.	Papiz MZ, Hawthornthwaite AM, Cogdell RJ, Woolley KJ, Wightman PA, Ferguson LA, Lindsay JG	J Mol Biol	10.1016/0022-2836(89)90612-8	1989	*
	Energy transfer dynamics and the mechanism of biohybrid photosynthetic antenna complexes chemically linked with artificial chromophores.	Yoneda Y, Noji T, Mizutani N, Kato D, Kondo M, Miyasaka H, Nagasawa Y, Dewa T	Phys Chem Chem Phys	10.1039/d2cp02465a	2022	*

References

#2118

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 145

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71447

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID4903.1 )

* These data were automatically processed and therefore are not curated

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