Strain identifier
BacDive ID: 1800
Type strain: 
Species: Rhodoblastus acidophilus
Strain Designation: 10050
Strain history: <- N. Pfennig, 10050
NCBI tax ID(s): 1074 (species)
version 9 (current version)
General
@ref: 2118
BacDive-ID: 1800
DSM-Number: 145
keywords: genome sequence, 16S sequence, Bacteria, anaerobe
description: Rhodoblastus acidophilus 10050 is an anaerobe bacterium that was isolated from cranberry bog.
NCBI tax id
- NCBI tax id: 1074
- Matching level: species
strain history
- @ref: 2118
- history: <- N. Pfennig, 10050
doi: 10.13145/bacdive1800.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Roseiarcaceae
- genus: Rhodoblastus
- species: Rhodoblastus acidophilus
- full scientific name: Rhodoblastus acidophilus (Pfennig 1969) Imhoff 2001
synonyms
- @ref: 20215
- synonym: Rhodopseudomonas acidophila
@ref: 2118
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Roseiarcaceae
genus: Rhodoblastus
species: Rhodoblastus acidophilus
full scientific name: Rhodoblastus acidophilus (Pfennig 1969) Imhoff 2001
strain designation: 10050
type strain: no
Culture and growth conditions
culture medium
- @ref: 2118
- name: ACID RHODOSPIRILLACEAE MEDIUM (DSMZ Medium 26)
- growth: yes
- link: https://mediadive.dsmz.de/medium/26
- composition: Name: ACID RHODOSPIRILLACEAE MEDIUM (DSMZ Medium 26) Composition: Disodium succinate 1.0 g/l Ammonium acetate 0.5 g/l KH2PO4 0.5 g/l MgSO4 x 7 H2O 0.4 g/l NaCl 0.4 g/l NH4Cl 0.4 g/l L-Cysteine HCl 0.3 g/l Yeast extract 0.2 g/l CaCl2 x 2 H2O 0.05 g/l Fe(III) citrate 0.005 g/l Resazurin 0.005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Vitamin B12 Distilled water
culture temp
- @ref: 2118
- growth: positive
- type: growth
- temperature: 25
Physiology and metabolism
oxygen tolerance
- @ref: 2118
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 2118
- sample type: cranberry bog
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Shrub (Scrub) |
| #Host Body-Site | #Plant | #Fruit (Seed) |
taxonmaps
- @ref: 69479
- File name: preview.99_80840.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_18472;97_22831;98_56244;99_80840&stattab=map
- Last taxonomy: Rhodoblastus acidophilus subclade
- 16S sequence: JN408835
- Sequence Identity:
- Total samples: 1867
- soil counts: 758
- aquatic counts: 693
- animal counts: 211
- plant counts: 205
Safety information
risk assessment
- @ref: 2118
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Rhodoblastus acidophilus strain DSM145 16S ribosomal RNA gene, partial sequence
- accession: JN408835
- length: 1427
- database: nuccore
- NCBI tax ID: 1074
Genome sequences
- @ref: 66792
- description: Rhodoblastus acidophilus DSM 145
- accession: 2838081316
- assembly level: draft
- database: img
- NCBI tax ID: 1074
External links
@ref: 2118
culture collection no.: DSM 145, Pfennig 10050
straininfo link
- @ref: 71447
- straininfo: 4903
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Enzymology | 229820 | Structural aspects of the dye-linked alcohol dehydrogenase of Rhodopseudomonas acidophila. | Bamforth CW, Quayle JR | Biochem J | 10.1042/bj1810517 | 1979 | *Alcohol Oxidoreductases/immunology/isolation & purification, Amino Acids/analysis, Chemical Phenomena, Chemistry, Coloring Agents, Electron Spin Resonance Spectroscopy, Iron/analysis, Isoelectric Focusing, Rhodopseudomonas/*enzymology, Spectrophotometry | Phylogeny |
| Metabolism | 239653 | Utilization of methanol by rhodospirillaceae. | Quayle JR, Pfennig N | Arch Microbiol | 10.1007/BF00428368 | 1975 | Bicarbonates/metabolism, Carbon/metabolism, Carbon Dioxide/metabolism, Culture Media, Formaldehyde/metabolism, Formates/metabolism, Hydrogen-Ion Concentration, Methanol/*metabolism, Methylamines/metabolism, Rhodopseudomonas/enzymology/growth & development/*metabolism, Ribulose-Bisphosphate Carboxylase/metabolism, Species Specificity, Vitamin B Complex/metabolism | Cultivation |
| Enzymology | 646793 | The dye-linked alcohol dehydrogenase of Rhodopseudomonas acidophila. Comparison with dye-linked methanol dehydrogenases. | Bamforth CW, Quayle JR | Biochem J | 10.1042/bj1690677 | 1978 | 2,2'-Dipyridyl/pharmacology, Alcohol Oxidoreductases/antagonists & inhibitors/*metabolism, Coloring Agents, Cyanides/pharmacology, Kinetics, Methanol, Molecular Weight, Oxygen/pharmacology, Rhodopseudomonas/*enzymology, Substrate Specificity, Temperature | Metabolism |
| Metabolism | 950554 | Metabolism of methanol by Rhodopseudomonas acidophila. | Sahm H, Cox RB, Quayle JR | J Gen Microbiol | 10.1099/00221287-94-2-313 | 1976 | Alcohol Oxidoreductases/metabolism, Aldehyde Oxidoreductases/metabolism, Anaerobiosis, Bicarbonates/metabolism, Cell-Free System, Ethanol/metabolism, Formaldehyde/metabolism, Formates/metabolism, Light, Methanol/*metabolism, Oxidation-Reduction, Oxo-Acid-Lyases/metabolism, Rhodopseudomonas/enzymology/*metabolism, Ribulose-Bisphosphate Carboxylase/metabolism, Succinates/metabolism | Enzymology |
| 2685328 | Crystallization and characterization of two crystal forms of the B800-850 light-harvesting complex from Rhodopseudomonas acidophila strain 10050. | Papiz MZ, Hawthornthwaite AM, Cogdell RJ, Woolley KJ, Wightman PA, Ferguson LA, Lindsay JG | J Mol Biol | 10.1016/0022-2836(89)90612-8 | 1989 | Apoproteins/analysis, Bacterial Proteins/*analysis, Bacteriochlorophylls/analysis, Carotenoids/analysis, Crystallization, Light-Harvesting Protein Complexes, Membrane Proteins/*analysis, Photosynthetic Reaction Center Complex Proteins | ||
| Enzymology | 8449320 | A progress report on the crystallographic studies on the B800-850 antenna complex from Rhodopseudomonas acidophila strain 10050. | Cogdell RJ, Halloren E, Hawthornthwaite AM, Thunnissen MM, Freer AA, McDermott G, Guthrie N, Isaacs N, Lindsay JG, Papiz M | Biochem Soc Trans | 10.1042/bst0210039 | 1993 | Apoproteins/chemistry, Bacterial Proteins/*chemistry/isolation & purification, Bacteriochlorophylls/chemistry, Crystallization, Rhodopseudomonas/*chemistry, X-Ray Diffraction | Phylogeny |
| Genetics | 8639597 | Deletion of a B800-850 light-harvesting complex in Rhodospirillum molischianum DSM119 leads to "revertants" expressing a B800-820 complex: insights into pigment binding. | Sauer PR, Lottspeich F, Unger E, Mentele R, Michel H | Biochemistry | 10.1021/bi9528255 | 1996 | Amino Acid Sequence, *Bacterial Proteins, Escherichia coli/genetics, Gene Deletion, Genes, Bacterial, *Light-Harvesting Protein Complexes, Models, Molecular, Molecular Sequence Data, Multigene Family, Photochemistry, Photosynthetic Reaction Center Complex Proteins/chemistry/*genetics/*metabolism, Protein Conformation, Rhodospirillum/*genetics/metabolism, Sequence Homology, Amino Acid | Metabolism |
| Genetics | 8662765 | The synthesis and assembly of functional high and low light LH2 antenna complexes from Rhodopseudomonas palustris in Rhodobacter sphaeroides. | Fowler GJ, Hunter CN | J Biol Chem | 10.1074/jbc.271.23.13356 | 1996 | Amino Acid Sequence, Base Sequence, Binding Sites, DNA Primers/genetics, DNA, Bacterial/genetics, Energy Transfer, Genes, Bacterial, Light, Molecular Sequence Data, Molecular Structure, Photosynthetic Reaction Center Complex Proteins/*biosynthesis/chemistry/genetics, Rhodobacter sphaeroides/genetics/*metabolism/radiation effects, Rhodopseudomonas/genetics/*metabolism/radiation effects, Sequence Homology, Amino Acid | Metabolism |
| Metabolism | 8740367 | Pigment-pigment interactions and energy transfer in the antenna complex of the photosynthetic bacterium Rhodopseudomonas acidophila. | Freer A, Prince S, Sauer K, Papiz M, Hawthornthwaite-Lawless A, McDermott G, Cogdell R, Isaacs NW | Structure | 10.1016/s0969-2126(96)00050-0 | 1996 | *Bacterial Proteins, Bacteriochlorophylls/chemistry/metabolism, Carotenoids/chemistry/metabolism, *Energy Transfer, *Light-Harvesting Protein Complexes, Models, Biological, Models, Molecular, Photosynthetic Reaction Center Complex Proteins/*chemistry, Protein Conformation, Rhodopseudomonas/*chemistry/physiology | |
| 9159480 | Apoprotein structure in the LH2 complex from Rhodopseudomonas acidophila strain 10050: modular assembly and protein pigment interactions. | Prince SM, Papiz MZ, Freer AA, McDermott G, Hawthornthwaite-Lawless AM, Cogdell RJ, Isaacs NW | J Mol Biol | 10.1006/jmbi.1997.0966 | 1997 | Apoproteins/ultrastructure, Bacterial Proteins/ultrastructure, Bacteriochlorophylls/chemistry, Hydrogen Bonding, *Light-Harvesting Protein Complexes, Macromolecular Substances, Membrane Proteins/ultrastructure, Photosynthetic Reaction Center Complex Proteins/*ultrastructure, Protein Binding, Protein Structure, Secondary, Protein Structure, Tertiary, Rhodopseudomonas/*chemistry, Solvents | ||
| Metabolism | 10338146 | Bacteriochlorin-protein interactions in native B800-B850, B800 deficient and B800-Bchla(p)-reconstituted complexes from Rhodopseudomonas acidophila, strain 10050. | Gall A, Fraser NJ, Bellissent-Funel MC, Scheer H, Robert B, Cogdell RJ | FEBS Lett | 10.1016/s0014-5793(99)00410-x | 1999 | *Bacterial Proteins, Bacteriochlorophylls/*metabolism, Carotenoids/metabolism, *Light-Harvesting Protein Complexes, Photosynthetic Reaction Center Complex Proteins/*metabolism, *Photosystem II Protein Complex, Rhodopseudomonas/*metabolism | |
| 10393258 | Uphill energy transfer in LH2-containing purple bacteria at room temperature | Trissl HW, Law CJ, Cogdell RJ | Biochim Biophys Acta | 10.1016/s0005-2728(99)00056-0 | 1999 | |||
| Enzymology | 10417411 | Derivative manipulation in the structure solution of the integral membrane LH2 complex. | Prince SM, McDermott G, Freer AA, Papiz MZ, Lawless AM, Cogdell RJ, Isaacs NW | Acta Crystallogr D Biol Crystallogr | 10.1107/s0907444999006514 | 1999 | Crystallization, Crystallography, X-Ray, Models, Molecular, Photosynthetic Reaction Center Complex Proteins/*chemistry/isolation & purification, Protein Structure, Secondary, Rhodopseudomonas/chemistry | Phylogeny |
| Metabolism | 10423247 | Selective release, removal, and reconstitution of bacteriochlorophyll a molecules into the B800 sites of LH2 complexes from Rhodopseudomonas acidophila 10050. | Fraser NJ, Dominy PJ, Ucker B, Simonin I, Scheer H, Cogdell RJ | Biochemistry | 10.1021/bi990796i | 1999 | *Bacterial Proteins, Bacteriochlorophylls/*chemistry/*metabolism, Binding Sites, Buffers, Circular Dichroism, Detergents, Energy Transfer, Glucosides, Intracellular Membranes/chemistry/metabolism, *Light-Harvesting Protein Complexes, Photosynthetic Reaction Center Complex Proteins/*chemistry/isolation & purification/*metabolism, *Photosystem II Protein Complex, Rhodopseudomonas/*chemistry/*metabolism, Temperature, Time Factors | Enzymology |
| 10777755 | B800-->B850 energy transfer mechanism in bacterial LH2 complexes investigated by B800 pigment exchange. | Herek JL, Fraser NJ, Pullerits T, Martinsson P, Polivka T, Scheer H, Cogdell RJ, Sundstrom V | Biophys J | 10.1016/S0006-3495(00)76803-2 | 2000 | *Bacterial Proteins, Biophysical Phenomena, Biophysics, Electrochemistry, Energy Transfer, *Light-Harvesting Protein Complexes, Photosynthetic Reaction Center Complex Proteins/*chemistry, Rhodopseudomonas/chemistry, Spectrophotometry | ||
| Enzymology | 11159459 | Efficient energy transfer from the carotenoid S(2) state in a photosynthetic light-harvesting complex. | Macpherson AN, Arellano JB, Fraser NJ, Cogdell RJ, Gillbro T | Biophys J | 10.1016/S0006-3495(01)76071-7 | 2001 | Bacteriochlorophylls/chemistry, Biophysical Phenomena, Biophysics, Carotenoids/*chemistry, Energy Transfer, Kinetics, Light-Harvesting Protein Complexes, Photochemistry, Photosynthetic Reaction Center Complex Proteins/*chemistry, Rhodopseudomonas/chemistry, Spectrophotometry | |
| 11226437 | Probing the binding sites of exchanged chlorophyll a in LH2 by Raman and site-selection fluorescence spectroscopies. | Gall A, Robert B, Cogdell RJ, Bellissent-Funel MC, Fraser NJ | FEBS Lett | 10.1016/s0014-5793(01)02161-5 | 2001 | *Bacterial Proteins, Binding Sites, Chlorophyll/*chemistry, Chlorophyll A, Cold Temperature, *Light-Harvesting Protein Complexes, Photosynthetic Reaction Center Complex Proteins/*chemistry, Protein Binding, Rhodopseudomonas/*chemistry, Spectrometry, Fluorescence, Spectrum Analysis, Raman | ||
| 11467938 | The crystallographic structure of the B800-820 LH3 light-harvesting complex from the purple bacteria Rhodopseudomonas acidophila strain 7050. | McLuskey K, Prince SM, Cogdell RJ, Isaacs NW | Biochemistry | 10.1021/bi010309a | 2001 | *Bacterial Proteins, Bacteriochlorophylls/chemistry, Carotenoids/chemistry, Crystallization, Crystallography, X-Ray, Hydrogen Bonding, *Light-Harvesting Protein Complexes, Models, Molecular, Photosynthetic Reaction Center Complex Proteins/*chemistry, Porphyrins/chemistry, Protein Structure, Secondary, Rhodopseudomonas/*chemistry | ||
| Metabolism | 12460683 | Rhodopseudomonas acidophila strain 10050 contains photosynthetic LH2 antenna complexes that are not enriched with phosphatidylglycerol, and the phospholipids have a fatty acyl composition that is unusual for purple non-sulfur bacteria. | Russell NJ, Coleman JK, Howard TD, Johnston E, Cogdell RJ | Biochim Biophys Acta | 10.1016/s0005-2728(02)00369-9 | 2002 | Bacterial Proteins/chemistry, Cell Fractionation, Cell Membrane/chemistry, Light, Macromolecular Substances, Phosphatidylglycerols/*chemistry, Phospholipids/*chemistry, Photosynthetic Reaction Center Complex Proteins/chemistry, Protein Structure, Quaternary, Rhodopseudomonas/*chemistry/metabolism | |
| Phylogeny | 12547211 | Detergent structure in crystals of the integral membrane light-harvesting complex LH2 from Rhodopseudomonas acidophila strain 10050. | Prince SM, Howard TD, Myles DA, Wilkinson C, Papiz MZ, Freer AA, Cogdell RJ, Isaacs NW | J Mol Biol | 10.1016/s0022-2836(02)01361-x | 2003 | Crystallization, Detergents/analysis/*chemistry, Hydrophobic and Hydrophilic Interactions, Intracellular Membranes/*chemistry, Membrane Proteins/*chemistry, Micelles, *Neutron Diffraction, Photosynthetic Reaction Center Complex Proteins/*chemistry, Rhodopseudomonas/*chemistry/*classification/cytology, Solubility | |
| Stress | 12595263 | The structure and thermal motion of the B800-850 LH2 complex from Rps.acidophila at 2.0A resolution and 100K: new structural features and functionally relevant motions. | Papiz MZ, Prince SM, Howard T, Cogdell RJ, Isaacs NW | J Mol Biol | 10.1016/s0022-2836(03)00024-x | 2003 | *Bacterial Proteins, Bacteriochlorophylls/*chemistry, Carotenoids/chemistry, Crystallization, Crystallography, X-Ray, Hot Temperature, Hydrogen Bonding, *Light-Harvesting Protein Complexes, Models, Molecular, Mutagenesis, Site-Directed, Photosynthetic Reaction Center Complex Proteins/*chemistry, Porphyrins/chemistry, Protein Conformation, Rhodopseudomonas/*chemistry | |
| Phylogeny | 12668456 | The ring structure and organization of light harvesting 2 complexes in a reconstituted lipid bilayer, resolved by atomic force microscopy. | Stamouli A, Kafi S, Klein DC, Oosterkamp TH, Frenken JW, Cogdell RJ, Aartsma TJ | Biophys J | 10.1016/S0006-3495(03)75053-X | 2003 | Crystallography/methods, Energy Transfer, Light, Light-Harvesting Protein Complexes/*chemistry/*radiation effects, Lipid Bilayers/*chemistry, Liposomes/*chemistry, Macromolecular Substances, Membrane Fluidity, Microscopy, Atomic Force, Phosphatidylcholines/*chemistry, Protein Conformation, Protein Structure, Tertiary, Rhodopseudomonas/chemistry/classification, Species Specificity | |
| Genetics | 14596617 | Membrane protein stability: high pressure effects on the structure and chromophore-binding properties of the light-harvesting complex LH2. | Gall A, Ellervee A, Sturgis JN, Fraser NJ, Cogdell RJ, Freiberg A, Robert B | Biochemistry | 10.1021/bi0350351 | 2003 | Amino Acid Sequence, Bacterial Proteins/chemistry, Bacteriochlorophylls/*chemistry, Carotenoids/chemistry, Light-Harvesting Protein Complexes/*chemistry, Membrane Proteins/*chemistry, Molecular Sequence Data, Pressure, Protein Binding, Protein Structure, Quaternary, Protein Structure, Tertiary, Rhodobacter sphaeroides/chemistry, Rhodopseudomonas/chemistry, Spectrophotometry, Spectrum Analysis, Raman, Thermodynamics | Stress |
| Stress | 15078088 | Fluorescence spectral fluctuations of single LH2 complexes from Rhodopseudomonas acidophila strain 10050. | Rutkauskas D, Novoderezkhin V, Cogdell RJ, van Grondelle R | Biochemistry | 10.1021/bi0497648 | 2004 | Bacterial Proteins/*chemistry, Hot Temperature, Light, Light-Harvesting Protein Complexes/*chemistry, Microscopy, Confocal/methods/statistics & numerical data, Nonlinear Dynamics, Normal Distribution, Photons, Rhodopseudomonas/*chemistry, Spectrometry, Fluorescence/methods/statistics & numerical data, Temperature, Thermodynamics | |
| 15740162 | Selective chemical shift assignment of B800 and B850 bacteriochlorophylls in uniformly [13C,15N]-labeled light-harvesting complexes by solid-state NMR spectroscopy at ultra-high magnetic field. | van Gammeren AJ, Buda F, Hulsbergen FB, Kiihne S, Hollander JG, Egorova-Zachernyuk TA, Fraser NJ, Cogdell RJ, de Groot HJ | J Am Chem Soc | 10.1021/ja044215a | 2005 | Bacterial Proteins/*chemistry, Carbon Isotopes, Light-Harvesting Protein Complexes/*chemistry, Nuclear Magnetic Resonance, Biomolecular/*methods, Rhodopseudomonas/chemistry | ||
| 15754054 | Biosynthetic site-specific (13) C labeling of the light-harvesting 2 protein complex: a model for solid state NMR structure determination of transmembrane proteins. | van Gammeren AJ, Hulsbergen FB, Hollander JG, de Groot HJ | J Biomol NMR | 10.1007/s10858-004-3736-7 | 2004 | Amino Acids/*chemistry, Carbon Isotopes/chemistry, Light-Harvesting Protein Complexes/*chemistry, Molecular Structure, Nuclear Magnetic Resonance, Biomolecular/*methods, Rhodopseudomonas/*chemistry, Spin Labels, Succinic Acid/chemistry | ||
| Genetics | 15928995 | Residual backbone and side-chain 13C and 15N resonance assignments of the intrinsic transmembrane light-harvesting 2 protein complex by solid-state Magic Angle Spinning NMR spectroscopy. | Gammeren AJ, Hulsbergen FB, Hollander JG, Groot HJ | J Biomol NMR | 10.1007/s10858-005-1604-8 | 2005 | Amino Acid Sequence, Bacteriochlorophyll A/chemistry, Carbon/chemistry, Carbon Isotopes, Diffusion, Light-Harvesting Protein Complexes/*chemistry, Magnetic Resonance Spectroscopy/*methods, Molecular Conformation, Molecular Sequence Data, Nitrogen/chemistry, Nitrogen Isotopes, Photosynthesis, Protons, Rhodopseudomonas/metabolism | Metabolism |
| Enzymology | 16228472 | Cloning, sequencing and analysis of the pucC genes from Rubrivivax gelatinosus strain 151 and Rhodopseudomonas acidophila strain 10050. | Simmons AE, Barrett SJ, Hunter CN, Cogdell RJ | Photosynth Res | 10.1023/A:1006403901559 | 2000 | Transcriptome | |
| 17416626 | Single-molecule spectroscopic characterization of light-harvesting 2 complexes reconstituted into model membranes. | Richter MF, Baier J, Cogdell RJ, Kohler J, Oellerich S | Biophys J | 10.1529/biophysj.106.103606 | 2007 | Dose-Response Relationship, Radiation, Light, Lipid Bilayers/*chemistry/radiation effects, Liposomes/*chemistry/radiation effects, Photosystem II Protein Complex/*chemistry/*radiation effects, Radiation Dosage, Rhodopseudomonas/*chemistry/radiation effects, Spectrometry, Fluorescence/*methods | ||
| Metabolism | 18613723 | Probing the effect of the binding site on the electrostatic behavior of a series of carotenoids reconstituted into the light-harvesting 1 complex from purple photosynthetic bacterium Rhodospirillum rubrum detected by stark spectroscopy. | Nakagawa K, Suzuki S, Fujii R, Gardiner AT, Cogdell RJ, Nango M, Hashimoto H | J Phys Chem B | 10.1021/jp801773j | 2008 | Bacterial Proteins/*metabolism, Binding Sites, Carotenoids/*chemistry/*metabolism, Light-Harvesting Protein Complexes/*metabolism, Models, Molecular, Molecular Structure, Nonlinear Dynamics, *Photosynthesis, Rhodospirillum rubrum/enzymology, Spectrophotometry, Spectrum Analysis, Static Electricity | Enzymology |
| 20408539 | Selective chemical shift assignment of bacteriochlorophyll a in uniformly [13C-15N]-labeled light-harvesting 1 complexes by solid-state NMR in ultrahigh magnetic field. | Pandit A, Buda F, van Gammeren AJ, Ganapathy S, de Groot HJ | J Phys Chem B | 10.1021/jp100688u | 2010 | Bacteriochlorophyll A/*chemistry, *Light, Light-Harvesting Protein Complexes/*chemistry, *Magnetics, Molecular Structure, Nuclear Magnetic Resonance, Biomolecular, *Quantum Theory, Rhodopseudomonas/*chemistry | ||
| Enzymology | 21486039 | Excitation-emission polarization spectroscopy of single light harvesting complexes. | Tubasum S, Cogdell RJ, Scheblykin IG, Pullerits T | J Phys Chem B | 10.1021/jp107480x | 2011 | Light-Harvesting Protein Complexes/*chemistry/metabolism, Rhodobacter sphaeroides/enzymology, Rhodopseudomonas/enzymology, Spectrometry, Fluorescence/instrumentation | Metabolism |
| Phylogeny | 21648465 | The electronically excited states of LH2 complexes from Rhodopseudomonas acidophila strain 10050 studied by time-resolved spectroscopy and dynamic Monte Carlo simulations. I. Isolated, non-interacting LH2 complexes. | Pflock TJ, Oellerich S, Southall J, Cogdell RJ, Ullmann GM, Kohler J | J Phys Chem B | 10.1021/jp202353c | 2011 | Computer Simulation, Detergents/chemistry, Light-Harvesting Protein Complexes/*chemistry, *Models, Biological, Monte Carlo Method, Rhodopseudomonas/*chemistry, Solubility, Spectrum Analysis | |
| 21650216 | The electronically excited states of LH2 complexes from Rhodopseudomonas acidophila strain 10050 studied by time-resolved spectroscopy and dynamic Monte Carlo simulations. II. Homo-arrays of LH2 complexes reconstituted into phospholipid model membranes. | Pflock TJ, Oellerich S, Krapf L, Southall J, Cogdell RJ, Ullmann GM, Kohler J | J Phys Chem B | 10.1021/jp2023583 | 2011 | *Computer Simulation, *Electrons, Light-Harvesting Protein Complexes/*chemistry, Microscopy, Atomic Force, *Models, Biological, Monte Carlo Method, Phospholipids/*chemistry, Rhodopseudomonas/*chemistry, Spectrometry, Fluorescence | ||
| Metabolism | 23445346 | Single-molecule spectroscopy on RC-LH1 complexes of Rhodopseudomonas acidophila strain 10050. | Bohm PS, Southall J, Cogdell RJ, Kohler J | J Phys Chem B | 10.1021/jp4005218 | 2013 | Glucosides/chemistry, Light-Harvesting Protein Complexes/*chemistry/metabolism, Rhodopseudomonas/*metabolism, Spectrometry, Fluorescence, Static Electricity | |
| Metabolism | 24224891 | Does the reconstitution of RC-LH1 complexes from Rhodopseudomonas acidophila strain 10050 into a phospholipid bilayer yield the optimum environment for optical spectroscopy? | Bohm PS, Kunz R, Southall J, Cogdell RJ, Kohler J | J Phys Chem B | 10.1021/jp409980k | 2013 | Light-Harvesting Protein Complexes/*chemistry/metabolism, Lipid Bilayers/*chemistry/metabolism, Models, Molecular, Phospholipids/*chemistry/metabolism, Rhodopseudomonas/chemistry/*enzymology, Spectrophotometry, Ultraviolet, Spectroscopy, Near-Infrared | Biotechnology |
| 24317912 | The effect of growth conditions on the light-harvesting apparatus in Rhodopseudomonas acidophila. | Gardiner AT, Cogdell RJ, Takaichi S | Photosynth Res | 10.1007/BF00146415 | 1993 | |||
| 24420461 | Absorption and linear dichroism spectroscopy at room and low temperatures of single crystals of the B800-850 light-harvesting complex from Rhodopseudomonas acidophila strain 10050. | Frank HA, Aldema ML, Parot PH, Cogdell RJ | Photosynth Res | 10.1007/BF00047080 | 1990 | |||
| Phylogeny | 26263694 | [Formation of 55-kDa Fragments under Impaired Coordination Bonds and Hydrophobic Interactions in Peripheral Light-Harvesting Complexes Isolated from Photosynthetic Purple Bacteria]. | Solov'ev AA, Erokhin YE | Mikrobiologiia | 2015 | Alphaproteobacteria/*chemistry/physiology, Bacterial Proteins/*chemistry/isolation & purification, Bacteriochlorophylls/chemistry, Chromatiaceae/*chemistry/physiology, Detergents/chemistry, Diphenylamine/chemistry, Hydrogen-Ion Concentration, Hydrophobic and Hydrophilic Interactions, Light, Light-Harvesting Protein Complexes/*chemistry/isolation & purification, Molecular Weight, Pheophytins/chemistry, Photosynthesis/physiology, Protein Multimerization | Enzymology | |
| Genetics | 26403467 | Extension of Light-Harvesting Ability of Photosynthetic Light-Harvesting Complex 2 (LH2) through Ultrafast Energy Transfer from Covalently Attached Artificial Chromophores. | Yoneda Y, Noji T, Katayama T, Mizutani N, Komori D, Nango M, Miyasaka H, Itoh S, Nagasawa Y, Dewa T | J Am Chem Soc | 10.1021/jacs.5b08508 | 2015 | Amino Acid Sequence, Fluorescence Resonance Energy Transfer, Light-Harvesting Protein Complexes/*chemistry, Molecular Sequence Data, Photosystem II Protein Complex/*chemistry, Spectrometry, Fluorescence | |
| 35080414 | Vibrational Modes Promoting Exciton Relaxation in the B850 Band of LH2. | Kim J, Nguyen-Phan TC, Gardiner AT, Yoon TH, Cogdell RJ, Cho M, Scholes GD | J Phys Chem Lett | 10.1021/acs.jpclett.1c03868 | 2022 | |||
| Metabolism | 35259912 | Ultrafast energy transfer between self-assembled fluorophore and photosynthetic light-harvesting complex 2 (LH2) in lipid bilayer. | Yoneda Y, Kito M, Mori D, Goto A, Kondo M, Miyasaka H, Nagasawa Y, Dewa T | J Chem Phys | 10.1063/5.0077910 | 2022 | Bacterial Proteins/chemistry, Bacteriochlorophylls/metabolism, Energy Transfer, *Light-Harvesting Protein Complexes/chemistry, *Lipid Bilayers, Spectrometry, Fluorescence | |
| 36128743 | Energy transfer dynamics and the mechanism of biohybrid photosynthetic antenna complexes chemically linked with artificial chromophores. | Yoneda Y, Noji T, Mizutani N, Kato D, Kondo M, Miyasaka H, Nagasawa Y, Dewa T | Phys Chem Chem Phys | 10.1039/d2cp02465a | 2022 | *Photosynthetic Reaction Center Complex Proteins, Light-Harvesting Protein Complexes/chemistry, Photosynthesis, Fluorescence Resonance Energy Transfer |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2118 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 145) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-145 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 71447 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID4903.1 | StrainInfo: A central database for resolving microbial strain identifiers |