Name: Guggenheimella bovis JE1S
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17989

Type strain:

Species: Guggenheimella bovis

Strain Designation: JE1S

Culture col. no.: DSM 15657, CIP 108087, OMZ 913

Strain history: CIP <- 2003, C. Wyss, Zürich, Switzerland: strain OMZ 913

NCBI tax ID(s): 228924 (species)

SI-ID 138003

CIP 108087, DSM 15657

Special Collections

Section

Guggenheimella bovis JE1S is an anaerobe, Gram-positive, rod-shaped animal pathogen that was isolated from bovine dermatitis digitalis lesion.

Gram-positive
rod-shaped
anaerobe
animal pathogen
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	[Eubacteriales, not assigned to family]
	Genus	*Guggenheimella*
	Species	**Guggenheimella bovis**
	Full Scientific Name (LPSN)	Guggenheimella bovis Wyss et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31243]	Gram stain	positive
[Ref.: #116912]	Gram stain	negative

[Ref.: #31243]	Cell length	1 µm

[Ref.: #31243]	Cell width	0.4 µm

[Ref.: #31243]	Cell shape	rod-shaped
[Ref.: #116912]	Cell shape	rod-shaped

[Ref.: #31243]	Motility	no
[Ref.: #116912]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6016]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #6016]

Culture medium growth

[Ref.: #6016]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6016]

Culture medium composition

expand / minimize

[Ref.: #6016]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #6016]

Culture medium growth

[Ref.: #6016]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6016]

Culture medium composition

expand / minimize

[Ref.: #36474]

Culture medium

MEDIUM 155 - for Treponema maltophilum

[Ref.: #36474]

Culture medium growth

[Ref.: #36474]

Culture medium composition

expand / minimize

[Ref.: #116912]

Culture medium

CIP Medium 155

[Ref.: #116912]

Culture medium growth

[Ref.: #116912]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #6016]	growth	37 °C
[Ref.: #31243]	growth	33-37 °C
[Ref.: #31243]	optimum	35 °C
[Ref.: #36474]	growth	37 °C
[Ref.: #116912]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #31243]			optimum	7.75
[Ref.: #31243]			growth	6.5-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6016]	Oxygen tolerance	anaerobe
[Ref.: #31243]	Oxygen tolerance	anaerobe

[Ref.: #31243]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116912]	cellobiose ChEBI	-	degradation
[Ref.: #116912]	D-arabinose ChEBI	-	degradation
[Ref.: #116912]	D-fructose ChEBI	-	degradation
[Ref.: #116912]	D-glucose ChEBI	-	degradation
[Ref.: #116912]	D-mannose ChEBI	-	degradation
[Ref.: #116912]	D-xylose ChEBI	-	degradation
[Ref.: #116912]	lactose ChEBI	-	degradation
[Ref.: #116912]	maltose ChEBI	-	degradation
[Ref.: #116912]	salicin ChEBI	-	degradation
[Ref.: #116912]	sucrose ChEBI	-	degradation

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #31243]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116912]	10874	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6016]	Sample type/isolated from	bovine dermatitis digitalis lesion
[Ref.: #6016]	Geographic location (country and/or sea, region)	Kanton Fribourg
[Ref.: #6016]	Country	Switzerland
[Ref.: #6016]	Country ISO 3 Code	CHE
[Ref.: #6016]	Continent	Europe

[Ref.: #116912]	Sample type/isolated from	Animal, Bovine dermatitis digitalis
[Ref.: #116912]	Country	Switzerland
[Ref.: #116912]	Country ISO 3 Code	CHE
[Ref.: #116912]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Inflammation	-
#Host	#Mammals	#Bovinae (Cow, Cattle)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY272039 (>99% sequence identity) for Guggenheimella bovis subclade from Microbeatlas

Aquatic Samples	46
Soil Samples	28
Animal Samples	161
Plant Samples	23
Total Samples	258

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6016]	Pathogenicity (animal)	yes
[Ref.: #6016]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #116912]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6016]	Guggenheimella bovis strain OMZ913 16S ribosomal RNA gene, partial sequence	AY272039	1501	GenBank ENA	228924 tax ID

[Ref.: #31243]

GC-content

44.4 mol%

Availability in culture collections External links

[Ref.: #6016]

Culture collection no.

DSM 15657, CIP 108087, OMZ 913

[Ref.: #86976]

SI-ID 138003

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Guggenheimella bovis gen. nov., sp. nov., isolated from lesions of bovine dermatitis digitalis.	Wyss C, Dewhirst FE, Paster BJ, Thurnheer T, Luginbuhl A	Int J Syst Evol Microbiol	10.1099/ijs.0.63116-0	2005	*

References

#6016

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15657

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31243

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27567 (see below)

#36474 ; Curators of the CIP;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86976

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138003.1 )

#116912 Collection of Institut Pasteur ; Curators of the CIP; CIP 108087

#27567

IJSEM 667 2005 ( DOI 10.1099/ijs.0.63116-0 , PubMed 15774641 )

* These data were automatically processed and therefore are not curated

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