Name: Tepidimonas ignava SPS-1037
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17942

Type strain:

Species: Tepidimonas ignava

Strain Designation: SPS-1037

Culture col. no.: DSM 12034

Strain history: <- M. Fernanda Nobre

NCBI tax ID(s): 114249 (species)

SI-ID 49227

DSM 12034, BCRC 17574, CCRC 17574

Special Collections

DSMZ

Section

Tepidimonas ignava SPS-1037 is a Gram-negative bacterium that was isolated from hot spring Saó.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Tepidimonas*
	Species	**Tepidimonas ignava**
	Full Scientific Name (LPSN)	Tepidimonas ignava Moreira et al. 2000

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4583]

Culture medium

THERMUS 162 MEDIUM (DSMZ Medium 878)

[Ref.: #4583]

Culture medium growth

[Ref.: #4583]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4583]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4583]			growth	50 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %92.002
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4583]	Sample type/isolated from	hot spring Saó
[Ref.: #4583]	Geographic location (country and/or sea, region)	Pedro do Sul
[Ref.: #4583]	Country	Portugal
[Ref.: #4583]	Country ISO 3 Code	PRT
[Ref.: #4583]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF177943 (>99% sequence identity) for Tepidimonas ignava from Microbeatlas

Aquatic Samples	444
Soil Samples	28
Animal Samples	337
Plant Samples	12
Total Samples	821

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4583]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4583]	Tepidimonas ignava 16S ribosomal RNA gene, complete sequence	AF177943	1493	GenBank ENA	114249 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Tepidimonas ignava DSM 12034	GCA_004342625	contig	GenBank ENA	114249 tax ID	*
[Ref.: #66792]	Tepidimonas ignava SPS-1037	GCA_007556615	contig	GenBank ENA	114249 tax ID	*
[Ref.: #66792]	Tepidimonas ignava strain DSM 12034	114249.3	wgs	PATRIC	114249 tax ID	*
[Ref.: #66792]	Tepidimonas ignava DSM 12034	2784746798	draft	JGI IMG/M	114249 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Tepidimonas ignava strain DSM 12034 PATRIC: 114249.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Tepidimonas ignava strain DSM 12034 PATRIC: 114249.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	90.947	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.002	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	71.827	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	66.835	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	83.91	no

Availability in culture collections External links

[Ref.: #4583]

Culture collection no.

DSM 12034

[Ref.: #86930]

SI-ID 49227

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tepidimonas sediminis sp. nov. and Tepidimonas alkaliphilus sp. nov., two novel moderately thermophilic species isolated from a hot spring.	Habib N, Khan IU, Salam N, Xiao M, Ahmed I, Zhi XY, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-017-1002-8	2017	*
Phylogeny	Tepidimonas ignava gen. nov., sp. nov., a new chemolithoheterotrophic and slightly thermophilic member of the beta-Proteobacteria.	Moreira C, Rainey FA, Nobre MF, da Silva MT, da Costa MS	Int J Syst Evol Microbiol	10.1099/00207713-50-2-735	2000	*

References

#4583

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12034

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86930

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49227.1 )

* These data were automatically processed and therefore are not curated

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Tepidimonas ignava strain DSM 12034

Tepidimonas ignava strain DSM 12034

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