Tepidimonas ignava (DSM 12034, SPS-1037)

Name: Tepidimonas ignava (DSM 12034, SPS-1037)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17942

Type strain

Strain Designation SPS-1037

Culture col. no. DSM 12034 SPS-1037

NCBI tax ID(s) 114249

Special Collections DSMZ

History DSMZ <- M. Fernanda Nobre

Links

Tepidimonas ignava SPS-1037 is a bacterium that was isolated from hot spring Saó.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 49227

DSM 12034,BCRC 17574,CCRC 17574

@ref 20215

Last LPSN update 2026-05-29 08:29:08

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Tepidimonas

Species Tepidimonas ignava

Full scientific name Tepidimonas ignava Moreira et al. 2000

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98.5

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4583	THERMUS 162 MEDIUM (DSMZ Medium 878)		Medium recipe at MediaDive	Name: THERMUS 162 MEDIUM (DSMZ Medium 878) Composition: Agar 28.0 g/l Na2HPO4 x 12 H2O 4.3 g/l Yeast extract 1.0 g/l Tryptone 1.0 g/l KH2PO4 0.544 g/l MgCl2 x 6 H2O 0.2 g/l Nitrilotriacetic acid 0.1 g/l CaSO4 x 2 H2O 0.04 g/l Fe(III) citrate 0.00122472 g/l MnSO4 x H2O 0.00114 g/l ZnSO4 x 7 H2O 0.00025 g/l H3BO3 0.00025 g/l CoCl2 x 6 H2O 2.25e-05 g/l CuSO4 x 5 H2O 1.25e-05 g/l Na2MoO4 x 2 H2O 1.25e-05 g/l H2SO4 Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
4583	positive	growth	55

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.556

Spore formation

@ref	Spore formation	Confidence
125439		98.903
125438		92.002

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
4583	hot spring Saó	Pedro do Sul	Portugal	PRT	Europe

Taxonmaps

69479

Global distribution of 16S sequence AF177943 (>99% sequence identity) for Tepidimonas ignava from Microbeatlas

Aquatic Samples	444
Soil Samples	28
Animal Samples	337
Plant Samples	12
Total Samples	821

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4583	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM434262v1 assembly for Tepidimonas ignava DSM 12034	contig	GCA_004342625	114249.3	2784746798	114249	72.56
66792	ASM755661v1 assembly for Tepidimonas ignava SPS-1037	contig	GCA_007556615	114249.4		114249	69.44

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
4583	Tepidimonas ignava 16S ribosomal RNA gene, complete sequence	AF177943	1493		114249

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM434262v1 assembly for Tepidimonas ignava DSM 12034
NCBI: GCA_004342625

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	88.56	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.56	no
125439	motility	BacteriaNetⓘ	yes	81.35	no
125439	spore_formation	BacteriaNetⓘ	no	98.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Tepidimonas ignava strain DSM 12034
PATRIC: 114249.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	90.95	no
125438	spore-forming	spore-formingⓘ	no	92.00	no
125438	aerobic	aerobicⓘ	yes	71.83	no
125438	thermophilic	thermophileⓘ	no	66.84	yes
125438	flagellated	motile2+ⓘ	yes	83.91	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Comparative genome sequence analysis of several species in the genus Tepidimonas and the description of a novel species Tepidimonas charontis sp. nov.	Albuquerque L, Castelhano N, Raposo P, Froufe HJC, Tiago I, Severino R, Roxo I, Gregorio I, Barroso C, Egas C, da Costa MS.	Int J Syst Evol Microbiol	10.1099/ijsem.0.003942	2020
Phylogeny	Tepidimonas sediminis sp. nov. and Tepidimonas alkaliphilus sp. nov., two novel moderately thermophilic species isolated from a hot spring.	Habib N, Khan IU, Salam N, Xiao M, Ahmed I, Zhi XY, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-017-1002-8	2017
Phylogeny	Tepidimonas ignava gen. nov., sp. nov., a new chemolithoheterotrophic and slightly thermophilic member of the beta-Proteobacteria.	Moreira C, Rainey FA, Nobre MF, da Silva MT, da Costa MS	Int J Syst Evol Microbiol	10.1099/00207713-50-2-735	2000

References

#4583	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12034
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Tepidimonas ignava (DSM 12034, SPS-1037)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004342625

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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