Strain identifier
BacDive ID: 17942
Type strain: 
Species: Tepidimonas ignava
Strain Designation: SPS-1037
Strain history: <- M. Fernanda Nobre
NCBI tax ID(s): 114249 (species)
version 8.1 (current version)
General
@ref: 4583
BacDive-ID: 17942
DSM-Number: 12034
keywords: genome sequence, 16S sequence, Bacteria, thermophilic, motile
description: Tepidimonas ignava SPS-1037 is a thermophilic, motile bacterium that was isolated from hot spring Saó.
NCBI tax id
- NCBI tax id: 114249
- Matching level: species
strain history
- @ref: 4583
- history: <- M. Fernanda Nobre
doi: 10.13145/bacdive17942.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Tepidimonas
- species: Tepidimonas ignava
- full scientific name: Tepidimonas ignava Moreira et al. 2000
@ref: 4583
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Tepidimonas
species: Tepidimonas ignava
full scientific name: Tepidimonas ignava Moreira et al. 2000
strain designation: SPS-1037
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 91.986 | |
| 69480 | 100 | negative |
Culture and growth conditions
culture medium
- @ref: 4583
- name: THERMUS 162 MEDIUM (DSMZ Medium 878)
- growth: yes
- link: https://mediadive.dsmz.de/medium/878
- composition: Name: THERMUS 162 MEDIUM (DSMZ Medium 878) Composition: Agar 28.0 g/l Na2HPO4 x 12 H2O 4.3 g/l Yeast extract 1.0 g/l Tryptone 1.0 g/l KH2PO4 0.544 g/l MgCl2 x 6 H2O 0.2 g/l Nitrilotriacetic acid 0.1 g/l CaSO4 x 2 H2O 0.04 g/l Fe(III) citrate 0.00122472 g/l MnSO4 x H2O 0.00114 g/l ZnSO4 x 7 H2O 0.00025 g/l H3BO3 0.00025 g/l CoCl2 x 6 H2O 2.25e-05 g/l CuSO4 x 5 H2O 1.25e-05 g/l Na2MoO4 x 2 H2O 1.25e-05 g/l H2SO4 Distilled water
culture temp
- @ref: 4583
- growth: positive
- type: growth
- temperature: 50
- range: thermophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 4583
- sample type: hot spring Saó
- geographic location: Pedro do Sul
- country: Portugal
- origin.country: PRT
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_78222.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_1;97_8940;98_10961;99_78222&stattab=map
- Last taxonomy: Tepidimonas ignava
- 16S sequence: AF177943
- Sequence Identity:
- Total samples: 821
- soil counts: 28
- aquatic counts: 444
- animal counts: 337
- plant counts: 12
Safety information
risk assessment
- @ref: 4583
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4583
- description: Tepidimonas ignava 16S ribosomal RNA gene, complete sequence
- accession: AF177943
- length: 1493
- database: ena
- NCBI tax ID: 114249
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Tepidimonas ignava DSM 12034 | GCA_004342625 | contig | ncbi | 114249 |
| 66792 | Tepidimonas ignava SPS-1037 | GCA_007556615 | contig | ncbi | 114249 |
| 66792 | Tepidimonas ignava strain DSM 12034 | 114249.3 | wgs | patric | 114249 |
| 66792 | Tepidimonas ignava DSM 12034 | 2784746798 | draft | img | 114249 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 91.857 | no |
| flagellated | yes | 79.841 | no |
| gram-positive | no | 99.056 | no |
| anaerobic | no | 95.466 | no |
| aerobic | yes | 81.219 | no |
| halophile | no | 88.342 | no |
| spore-forming | no | 95.196 | no |
| thermophile | yes | 96.642 | yes |
| glucose-util | no | 81.076 | no |
| glucose-ferment | no | 83.011 | no |
External links
@ref: 4583
culture collection no.: DSM 12034
straininfo link
- @ref: 86930
- straininfo: 49227
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 10758883 | Tepidimonas ignava gen. nov., sp. nov., a new chemolithoheterotrophic and slightly thermophilic member of the beta-Proteobacteria. | Moreira C, Rainey FA, Nobre MF, da Silva MT, da Costa MS | Int J Syst Evol Microbiol | 10.1099/00207713-50-2-735 | 2000 | Base Composition, Betaproteobacteria/*classification/isolation & purification/physiology/ultrastructure, Culture Media, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fresh Water/*microbiology, Genes, rRNA, Lipids/analysis, Molecular Sequence Data, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Temperature, Water Microbiology | Cultivation |
| Phylogeny | 29255999 | Tepidimonas sediminis sp. nov. and Tepidimonas alkaliphilus sp. nov., two novel moderately thermophilic species isolated from a hot spring. | Habib N, Khan IU, Salam N, Xiao M, Ahmed I, Zhi XY, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-017-1002-8 | 2017 | Bacterial Typing Techniques, Base Composition, Burkholderiales/classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Hot Springs/*microbiology, Hot Temperature, Phospholipids/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4583 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12034) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12034 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 86930 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49227.1 | StrainInfo: A central database for resolving microbial strain identifiers |