Name: Aquabacterium limnoticum ABP-4
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17928

Type strain:

Species: Aquabacterium limnoticum

Strain Designation: ABP-4

Culture col. no.: DSM 26447, BCRC 80167, KCTC 23306

Strain history: <- W-M Chen, Nat Kaohsiung Marine Uinv., Taiwan

NCBI tax ID(s): 708634 (species)

SI-ID 402256

DSM 26447

Special Collections

Section

Aquabacterium limnoticum ABP-4 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that was isolated from freshwater spring.

Gram-negative
rod-shaped
facultative anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Aquabacterium*
	Species	**Aquabacterium limnoticum**
	Full Scientific Name (LPSN)	Aquabacterium limnoticum Chen et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30203]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #30203]	Cell length	1.3-2.0 µm

[Ref.: #30203]	Cell width	0.8-1 µm

[Ref.: #30203]	Cell shape	rod-shaped

[Ref.: #30203]	Motility	no

Multimedia content

[Ref.: #18224]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18224]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #18224]

Culture medium growth

[Ref.: #18224]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18224]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #18224]	growth	28 °C
[Ref.: #30203]	growth	20-40 °C
[Ref.: #30203]	optimum	30-37 °C
[Ref.: #67771]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #30203]			optimum	07-09
[Ref.: #30203]			growth	07-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30203]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #30203]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30203]		NaCl		growth	0-3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30203]	alanine ChEBI	+	carbon source
[Ref.: #30203]	asparagine ChEBI	+	carbon source
[Ref.: #30203]	glutamate ChEBI	+	carbon source
[Ref.: #30203]	glycogen ChEBI	+	carbon source
[Ref.: #30203]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #30203]	succinate ChEBI	+	carbon source
[Ref.: #30203]	tween 80 ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #30203]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30203]	catalase	+	1.11.1.6
[Ref.: #30203]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18224]	Sample type/isolated from	freshwater spring
[Ref.: #18224]	Geographic location (country and/or sea, region)	Taichung County
[Ref.: #18224]	Country	Taiwan, Province of China
[Ref.: #18224]	Country ISO 3 Code	TWN
[Ref.: #18224]	Continent	Asia
[Ref.: #18224]	Geographic location	24.1208°/120.6740°

[Ref.: #67771]	Sample type/isolated from	From freshwater
[Ref.: #67771]	Country	Taiwan, Province of China
[Ref.: #67771]	Country ISO 3 Code	TWN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Spring

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18224]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18224]	Aquabacterium limnoticum strain ABP-4 16S ribosomal RNA gene, partial sequence	GU319965	1443	GenBank ENA	708634 tax ID

[Ref.: #18224]

GC-content

68.6 mol%

Availability in culture collections External links

[Ref.: #18224]

Culture collection no.

DSM 26447, BCRC 80167, KCTC 23306

[Ref.: #86917]

SI-ID 402256

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aquabacterium pictum sp. nov., the first aerobic bacteriochlorophyll a-containing fresh water bacterium in the genus Aquabacterium of the class Betaproteobacteria.	Hirose S, Tank M, Hara E, Tamaki H, Mori K, Takaichi S, Haruta S, Hanada S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003798	2020	*
Phylogeny	Aquabacterium olei sp. nov., an oil-degrading bacterium isolated from oil-contaminated soil.	Pham VHT, Jeong SW, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000458	2015	*
Phylogeny	Aquabacterium limnoticum sp. nov., isolated from a freshwater spring.	Chen WM, Cho NT, Yang SH, Arun AB, Young CC, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijs.0.030635-0	2011	*

References

#18224

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26447

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30203

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26548 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#86917

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402256.1 )

#26548

IJSEM 698 2012 ( DOI 10.1099/ijs.0.030635-0 , PubMed 21551326 )

* These data were automatically processed and therefore are not curated

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