Name: Zhongshania antarctica ZS5-23
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17921

Type strain:

Species: Zhongshania antarctica

Strain Designation: ZS5-23

Culture col. no.: DSM 25701, CCTCC AB 209246, KACC 14066

Strain history: <- KACC <- Y.-Z. Zhang et al., State Key Lab. Microbial Technology, Marine Biotechnology Research Center, Shandong University, China

NCBI tax ID(s): 641702 (species)

SI-ID 402187

DSM 25701

Section

Zhongshania antarctica ZS5-23 is a mesophilic, motile bacterium that was isolated from coastal fast ice.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Spongiibacteraceae*
	Genus	*Zhongshania*
	Species	**Zhongshania antarctica**
	Full Scientific Name (LPSN)	Zhongshania antarctica Li et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #69480]	Motility	yes Confidence in %94.74

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18092]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)

[Ref.: #18092]

Culture medium growth

[Ref.: #18092]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18092]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18092]			growth	28 °C

[Ref.: #18092]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18092]	Sample type/isolated from	coastal fast ice
[Ref.: #18092]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Ice

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ889619 (>99% sequence identity) for Zhongshania from Microbeatlas

Aquatic Samples	3986
Soil Samples	107
Animal Samples	283
Plant Samples	21
Total Samples	4397

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18092]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18092]	Zhongshania antarctica strain ZS5-23 16S ribosomal RNA gene, partial sequence	FJ889619	1501	ENA	641702 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Zhongshania antarctica DSM 25701	GCA_014202945	contig	GenBank	641702 tax ID	*
[Ref.: #66792]	Zhongshania antarctica ZS5-23	GCA_014898265	contig	GenBank	641702 tax ID	*
[Ref.: #66792]	Zhongshania antarctica strain DSM 25701	641702.4	wgs	PATRIC	641702 tax ID	*
[Ref.: #66792]	Zhongshania antarctica DSM 25701	2861647389	draft	JGI IMG/M	641702 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Zhongshania antarctica strain DSM 25701 PATRIC: 641702.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Zhongshania antarctica strain DSM 25701 PATRIC: 641702.4
[Ref.: #69480]	gram-positive	no	98.574	no
[Ref.: #69480]	anaerobic	no	98.828	no
[Ref.: #69480]	halophile	yes	80.63	no
[Ref.: #69480]	spore-forming	no	95.239	no
[Ref.: #69480]	glucose-util	no	57.996	no
[Ref.: #69480]	thermophile	no	99.026	yes
[Ref.: #69480]	flagellated	yes	75.217	no
[Ref.: #69480]	aerobic	yes	93.724	no
[Ref.: #69480]	motile	yes	81.724	no
[Ref.: #69480]	glucose-ferment	no	91.954	no

Availability in culture collections External links

[Ref.: #18092]

Culture collection no.

DSM 25701, CCTCC AB 209246, KACC 14066

[Ref.: #86910]

SI-ID 402187

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Zhongshania aliphaticivorans sp. nov., an aliphatic hydrocarbon-degrading bacterium isolated from marine sediment, and transfer of Spongiibacter borealis Jang et al. 2011 to the genus Zhongshania as Zhongshania borealis comb. nov.	Lo N, Kang HJ, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.068593-0	2014	*
Phylogeny	Zhongshania antarctica gen. nov., sp. nov. and Zhongshania guokunii sp. nov., gammaproteobacteria respectively isolated from coastal attached (fast) ice and surface seawater of the Antarctic.	Li HJ, Zhang XY, Chen CX, Zhang YJ, Gao ZM, Yu Y, Chen XL, Chen B, Zhang YZ	Int J Syst Evol Microbiol	10.1099/ijs.0.026153-0	2010	*

References

#18092

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25701

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86910

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402187.1 )

* These data were automatically processed and therefore are not curated

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Zhongshania antarctica strain DSM 25701

Zhongshania antarctica strain DSM 25701

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