Strain identifier
BacDive ID: 17921
Type strain: 
Species: Zhongshania antarctica
Strain Designation: ZS5-23
Strain history: <- KACC <- Y.-Z. Zhang et al., State Key Lab. Microbial Technology, Marine Biotechnology Research Center, Shandong University, China
NCBI tax ID(s): 641702 (species)
version 8.1 (current version)
General
@ref: 18092
BacDive-ID: 17921
DSM-Number: 25701
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Zhongshania antarctica ZS5-23 is a mesophilic, motile bacterium that was isolated from coastal fast ice.
NCBI tax id
- NCBI tax id: 641702
- Matching level: species
strain history
- @ref: 18092
- history: <- KACC <- Y.-Z. Zhang et al., State Key Lab. Microbial Technology, Marine Biotechnology Research Center, Shandong University, China
doi: 10.13145/bacdive17921.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Cellvibrionales
- family: Spongiibacteraceae
- genus: Zhongshania
- species: Zhongshania antarctica
- full scientific name: Zhongshania antarctica Li et al. 2011
@ref: 18092
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Spongiibacteraceae
genus: Zhongshania
species: Zhongshania antarctica
full scientific name: Zhongshania antarctica Li et al. 2011
strain designation: ZS5-23
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 94.74 | |
| 69480 | 99.999 | negative |
Culture and growth conditions
culture medium
- @ref: 18092
- name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514c
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) Composition: NaCl 19.45 g/l Agar 18.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l Na2CO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 18092
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.994 |
Isolation, sampling and environmental information
isolation
- @ref: 18092
- sample type: coastal fast ice
- continent: Australia and Oceania
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Ice
taxonmaps
- @ref: 69479
- File name: preview.99_3871.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_305;96_1986;97_2387;98_2948;99_3871&stattab=map
- Last taxonomy: Zhongshania
- 16S sequence: FJ889619
- Sequence Identity:
- Total samples: 4397
- soil counts: 107
- aquatic counts: 3986
- animal counts: 283
- plant counts: 21
Safety information
risk assessment
- @ref: 18092
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18092
- description: Zhongshania antarctica strain ZS5-23 16S ribosomal RNA gene, partial sequence
- accession: FJ889619
- length: 1501
- database: ena
- NCBI tax ID: 641702
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Zhongshania antarctica DSM 25701 | GCA_014202945 | contig | ncbi | 641702 |
| 66792 | Zhongshania antarctica ZS5-23 | GCA_014898265 | contig | ncbi | 641702 |
| 66792 | Zhongshania antarctica strain DSM 25701 | 641702.4 | wgs | patric | 641702 |
| 66792 | Zhongshania antarctica DSM 25701 | 2861647389 | draft | img | 641702 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.574 | no |
| anaerobic | no | 98.828 | no |
| halophile | yes | 80.63 | no |
| spore-forming | no | 95.239 | no |
| glucose-util | no | 57.996 | no |
| thermophile | no | 99.026 | yes |
| flagellated | yes | 75.217 | no |
| aerobic | yes | 93.724 | no |
| motile | yes | 81.724 | no |
| glucose-ferment | no | 91.954 | no |
External links
@ref: 18092
culture collection no.: DSM 25701, CCTCC AB 209246, KACC 14066
straininfo link
- @ref: 86910
- straininfo: 402187
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20851909 | Zhongshania antarctica gen. nov., sp. nov. and Zhongshania guokunii sp. nov., gammaproteobacteria respectively isolated from coastal attached (fast) ice and surface seawater of the Antarctic. | Li HJ, Zhang XY, Chen CX, Zhang YJ, Gao ZM, Yu Y, Chen XL, Chen B, Zhang YZ | Int J Syst Evol Microbiol | 10.1099/ijs.0.026153-0 | 2010 | Aerobiosis, Antarctic Regions, Bacterial Typing Techniques, Base Composition, Catalase/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Gammaproteobacteria/*classification/genetics/*isolation & purification/physiology, *Ice, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature | Metabolism |
| Phylogeny | 25122615 | Zhongshania aliphaticivorans sp. nov., an aliphatic hydrocarbon-degrading bacterium isolated from marine sediment, and transfer of Spongiibacter borealis Jang et al. 2011 to the genus Zhongshania as Zhongshania borealis comb. nov. | Lo N, Kang HJ, Jeon CO | Int J Syst Evol Microbiol | 10.1099/ijs.0.068593-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Hydrocarbons/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry | Genetics |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18092 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25701) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25701 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 86910 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID402187.1 | StrainInfo: A central database for resolving microbial strain identifiers |