Dasania marina SE12 | Type strain | DSM 21967, JCM 13441, KCTC 12566, KOPRI 20902 | BacDiveID:17908

Strain identifier

BacDive ID: 17908

Type strain:

Species: Dasania marina

Strain Designation: SE12

Culture col. no.: DSM 21967, JCM 13441, KCTC 12566, KOPRI 20902

Strain history: <- HK Lee, KOPRI

NCBI tax ID(s): 1121374 (strain), 471499 (species)

SI-ID 397584

DSM 21967

Special Collections

Section

Dasania marina SE12 is an aerobe, Gram-negative bacterium that was isolated from marine sediment.

Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Spongiibacteraceae*
	Genus	*Dasania*
	Species	**Dasania marina**
	Full Scientific Name (LPSN)	Dasania marina Lee et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16027]			growth	20 °C
[Ref.: #67770]			growth	20 °C
[Ref.: #67771]			growth	10-20 °C

Information on physiology and metabolism Physiology and metabolism

Oxygen tolerance

aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %92.039
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Observation

quinones: Q-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16027]	Sample type/isolated from	marine sediment
[Ref.: #16027]	Geographic location (country and/or sea, region)	Ny-Alesund, Spitsbergen
[Ref.: #16027]	Country	Norway
[Ref.: #16027]	Country ISO 3 Code	NOR
[Ref.: #16027]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Marine sediment sample from Ny-Ålesund
[Ref.: #67770]	Geographic location (country and/or sea, region)	Spitsbergen Islands
[Ref.: #67770]	Country	Norway
[Ref.: #67770]	Country ISO 3 Code	NOR
[Ref.: #67770]	Continent	Europe

[Ref.: #67771]	Sample type/isolated from	From Kings bay Sediment
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Global distribution of 16S sequence AY771747 (>99% sequence identity) for Dasania marina subclade from Microbeatlas

Aquatic Samples	1679
Soil Samples	46
Animal Samples	65
Plant Samples	9
Total Samples	1799

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16027]	Dasania marina strain KOPRI 20902 16S ribosomal RNA gene, partial sequence	AY771747	1486	GenBank ENA	1121374 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Dasania marina DSM 21967	GCA_000373485	scaffold	GenBank ENA	1121374 tax ID
[Ref.: #66792]	Dasania marina DSM 21967	1121374.3	wgs	PATRIC	1121374 tax ID	*
[Ref.: #66792]	Dasania marina DSM 21967	2515154073	draft	JGI IMG/M	1121374 tax ID	*

GC-content

37 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Dasania marina DSM 21967 DSM 21967 NCBI: GCA_000373485.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Dasania marina DSM 21967 PATRIC: 1121374.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.405	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.039	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	77.643	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.39	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	76.255	no

Availability in culture collections External links

Culture collection no.

DSM 21967, JCM 13441, KCTC 12566, KOPRI 20902

SI-ID 397584

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oceanicoccus sagamiensis gen. nov., sp. nov., a gammaproteobacterium isolated from sea water of Sagami Bay in Japan.	Park S, Yoshizawa S, Kogure K, Yokota A	J Microbiol	10.1007/s12275-011-0368-y	2011	*
Phylogeny	Dasania marina gen. nov., sp. nov., of the order Pseudomonadales, isolated from Arctic marine sediment.	Lee YK, Hong SG, Cho HH, Cho KH, Lee HK	J Microbiol	2644	2007	*

References

#16027

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21967

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86897

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397584.1 )

* These data were automatically processed and therefore are not curated

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