Dasania marina (DSM 21967, JCM 13441, KCTC 12566)

Name: Dasania marina (DSM 21967, JCM 13441, KCTC 12566)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17908

Type strain

Strain Designation SE12

Culture col. no. DSM 21967 JCM 13441 KCTC 12566 KOPRI 20902 SE12

NCBI tax ID(s) 1121374 471499

Special Collections DSMZ JCM KCTC

Links

Dasania marina SE12 is an aerobe, psychrophilic, Gram-negative prokaryote that was isolated from marine sediment.

Gram-negative aerobe psychrophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397584

KCTC 12566,JCM 13441,DSM 21967

@ref 20215

Last LPSN update 2025-12-16 09:51:13

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Cellvibrionales

Family Spongiibacteraceae

Genus Dasania

Species Dasania marina

Full scientific name Dasania marina Lee et al. 2008

Morphology

Cell morphology

@ref	Gram stain
67771	negative
125438	negative
125439	negative

Multimedia

@ref:	66793
multimedia content:	EM_DSM_21967_1.jpg
multimedia.multimedia content:	EM_DSM_21967_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_21967_2.jpg
multimedia.multimedia content:	EM_DSM_21967_2.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_21967_3.jpg
multimedia.multimedia content:	EM_DSM_21967_3.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_21967_4.jpg
multimedia.multimedia content:	EM_DSM_21967_4.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_21967_5.jpg
multimedia.multimedia content:	EM_DSM_21967_5.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16027	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16027	positive	growth	20	psychrophilic
67770	positive	growth	20	psychrophilic
67771	positive	growth	10-20	psychrophilic

Physiology and metabolism

Oxygen tolerance

67771

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125438		92.039
125439		99.8

Observation

67770

Observationquinones: Q-8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16027	marine sediment	Ny-Alesund, Spitsbergen	Norway	NOR	Europe
67770	Marine sediment sample from Ny-Ålesund	Spitsbergen Islands	Norway	NOR	Europe
67771	From Kings bay Sediment		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY771747 (>99% sequence identity) for Dasania marina subclade from Microbeatlas

Aquatic Samples	1679
Soil Samples	46
Animal Samples	65
Plant Samples	9
Total Samples	1799

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16027	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM37348v1 assembly for Dasania marina DSM 21967	scaffold	GCA_000373485	1121374.3	2515154073	1121374	74.76

Genome browser: GCA_000373485

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16027	Dasania marina strain KOPRI 20902 16S ribosomal RNA gene, partial sequence	AY771747	1486		1121374

GC content

@ref	GC-content (mol%)	Method
67770	37	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Dasania marina DSM 21967
NCBI: GCA_000373485

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.80	no
125439	motility	BacteriaNetⓘ	yes	85.70	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	87.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Dasania marina DSM 21967
PATRIC: 1121374.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	yes
125438	anaerobic	anaerobicⓘ	no	97.41	yes
125438	spore-forming	spore-formingⓘ	no	92.04	no
125438	aerobic	aerobicⓘ	yes	77.64	yes
125438	thermophilic	thermophileⓘ	no	98.39	yes
125438	flagellated	motile2+ⓘ	yes	76.26	no

Literature

Title	Authors	Journal	DOI	Year
N-Acyl Homoserine Lactone Production by the Marine Isolate, Dasania marina.	Alimiran F, David S, Birks S, Oldham A, Henderson D.	Microorganisms	10.3390/microorganisms12071496	2024
Functional characterization of a novel flavin reductase from a deep-sea sediment metagenomic library and its application for indirubin production.	Du J, Li Y, Chen Z, Wang C, Huang Y, Li L.	Appl Environ Microbiol	10.1128/aem.00429-24	2024
Taxonomy and evolution of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria: description of Luminiphilus syltensis gen. nov., sp. nov., reclassification of Haliea rubra as Pseudohaliea rubra gen. nov., comb. nov., and emendation of Chromatocurvus halotolerans.	Spring S, Riedel T, Sproer C, Yan S, Harder J, Fuchs BM.	BMC Microbiol	10.1186/1471-2180-13-118	2013
Oceanicoccus sagamiensis gen. nov., sp. nov., a gammaproteobacterium isolated from sea water of Sagami Bay in Japan.	Park S, Yoshizawa S, Kogure K, Yokota A	J Microbiol	10.1007/s12275-011-0368-y	2011
Dasania marina gen. nov., sp. nov., of the order Pseudomonadales, isolated from Arctic marine sediment.	Lee YK, Hong SG, Cho HH, Cho KH, Lee HK	J Microbiol	2644	2007

References

#16027	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21967
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Dasania marina (DSM 21967, JCM 13441, KCTC 12566)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000373485

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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