Name: Simiduia areninigrae M2-5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17907

Type strain:

Species: Simiduia areninigrae

Strain Designation: M2-5

Culture col. no.: DSM 26448, KCTC 23293, NCAIM B 02424

Strain history: <- BC Kim, KRIBB

NCBI tax ID(s): 679260 (species)

SI-ID 404434

DSM 26448

Section

Simiduia areninigrae M2-5 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from black sea sand.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Cellvibrionaceae*
	Genus	*Simiduia*
	Species	**Simiduia areninigrae**
	Full Scientific Name (LPSN)	Simiduia areninigrae Kim et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30224]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #30224]	Cell length	1.4-1.8 µm

[Ref.: #30224]	Cell width	0.5-0.7 µm

[Ref.: #30224]	Cell shape	rod-shaped

[Ref.: #30224]	Motility	yes

[Ref.: #30224]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18225]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)

[Ref.: #18225]

Culture medium growth

[Ref.: #18225]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18225]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #18225]	growth	28 °C
[Ref.: #30224]	growth	10-37 °C
[Ref.: #30224]	optimum	25-30 °C
[Ref.: #67771]	growth	25-30 °C

[Ref.: #18225]	Temperature range	mesophilic
[Ref.: #30224]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30224]			optimum	08-09
[Ref.: #30224]			growth	07-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30224]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30224]		NaCl		growth	1-6	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30224]		esculin ChEBI	+	hydrolysis
[Ref.: #30224]		nitrate ChEBI	+	reduction

	Enzyme	Enzyme activity	EC number
[Ref.: #30224]	acid phosphatase	+	3.1.3.2
[Ref.: #30224]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30224]	catalase	+	1.11.1.6
[Ref.: #30224]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18225]	Sample type/isolated from	black sea sand
[Ref.: #18225]	Geographic location (country and/or sea, region)	Jeju Island
[Ref.: #18225]	Country	Republic of Korea
[Ref.: #18225]	Country ISO 3 Code	KOR
[Ref.: #18225]	Continent	Asia
[Ref.: #18225]	Geographic location	33.2442°/126.5750°

[Ref.: #67771]	Sample type/isolated from	From sand, seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Sandy

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ872422 (>99% sequence identity) for Simiduia areninigrae from Microbeatlas

Aquatic Samples	81
Soil Samples	1
Animal Samples	1
Plant Samples	1
Total Samples	84

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18225]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18225]	Simiduia areninigrae strain M2-5 16S ribosomal RNA gene, partial sequence	GQ872422	1463	ENA	679260 tax ID

[Ref.: #18225]

GC-content

53.3 mol%

Availability in culture collections External links

[Ref.: #18225]

Culture collection no.

DSM 26448, KCTC 23293, NCAIM B 02424

[Ref.: #86896]

SI-ID 404434

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Simiduia areninigrae sp. nov., an agarolytic bacterium isolated from sea sand.	Kim BC, Poo H, Lee KH, Kim MN, Park DS, Oh HW, Lee JM, Shin KS	Int J Syst Evol Microbiol	10.1099/ijs.0.031153-0	2011	*
Phylogeny	Simiduia curdlanivorans sp. nov., a curdlan-degrading bacterium isolated from the junction between the ocean and a freshwater spring, and emended description of the genus Simiduia.	Park S, Kim SI, Jung YT, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.065334-0	2014	*
Phylogeny	Simiduia litorea sp. nov., isolated from seashore sediments of the Sea of Japan.	Tanaka N, Romanenko LA, Svetashev VI, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.061846-0	2014	*

References

#18225

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26448

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30224

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26567 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86896

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404434.1 )

#26567

IJSEM 906 2012 ( DOI 10.1099/ijs.0.031153-0 , PubMed 21669928 )

* These data were automatically processed and therefore are not curated

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