Thioprofundum lithotrophicum (DSM 19353, JCM 14586, 106)

Name: Thioprofundum lithotrophicum (DSM 19353, JCM 14586, 106)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17847

Type strain

Strain Designation 106

Culture col. no. DSM 19353 JCM 14586 106

NCBI tax ID(s) 571898

Special Collections DSMZ JCM

History DSMZ <- K. Takai, Japan Agency for Marine-Earth Sci. and Technol. (JAMSTEC), Extremobiosphere Res. Center, Yokosuka; strain 106 <- K. Takai {2006} JCM <-- K. Takai 106.

Links

Thioprofundum lithotrophicum 106 is a microaerophile bacterium that was isolated from black smoker hydrothermal chimney.

microaerophile 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398349

JCM 14586,DSM 19353

@ref 20215

Last LPSN update 2026-05-29 08:29:06

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Chromatiales

Family Thioprofundaceae

Genus Thioprofundum

Species Thioprofundum lithotrophicum

Full scientific name Thioprofundum lithotrophicum corrig. Takai et al. 2010

Synonyms (1)

Thioprofundum lithotrophica

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8067	THIOPROFUNDUM LITHOTROPHICUM MEDIUM (DSMZ Medium 1053a)		Medium recipe at MediaDive	Name: THIOPROFUNDUM LITHOTROPHICUM MEDIUM (DSMZ Medium 1053a) Composition: MgCl2 x 6 H2O 2.96736 g/l Na2S2O3 x 5 H2O 2.96736 g/l NaHCO3 0.98912 g/l NaNO3 0.98912 g/l CaCl2 0.791296 g/l KCl 0.326409 g/l NH4Cl 0.24728 g/l K2HPO4 0.0890208 g/l KH2PO4 0.0692384 g/l MgSO4 x 7 H2O 0.0296736 g/l Nitrilotriacetic acid 0.0148368 g/l Fe2(SO4)3 x H2O 0.0098912 g/l NaCl 0.0098912 g/l MnSO4 x H2O 0.0049456 g/l ZnSO4 x 7 H2O 0.00178042 g/l CoSO4 x 7 H2O 0.00178042 g/l FeSO4 x 7 H2O 0.00098912 g/l CaCl2 x 2 H2O 0.00098912 g/l Sodium resazurin 0.00049456 g/l NiCl2 x 6 H2O 0.000296736 g/l AlK(SO4)2 x 12 H2O 0.000197824 g/l H3BO3 9.8912e-05 g/l Na2MoO4 x 2 H2O 9.8912e-05 g/l Pyridoxine hydrochloride 9.8912e-05 g/l CuSO4 x 5 H2O 9.8912e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l Nicotinic acid 4.9456e-05 g/l Riboflavin 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l Folic acid 1.97824e-05 g/l Biotin 1.97824e-05 g/l Na2WO4 x 2 H2O 3.95648e-06 g/l Na2SeO3 x 5 H2O 2.96736e-06 g/l Vitamin B12 9.8912e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8067	positive	growth	50
67770	positive	growth	50

Physiology and metabolism

Oxygen tolerance

8067

Oxygen tolerancemicroaerophile

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Hydrothermal vent
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Geographic location
8067	black smoker hydrothermal chimney	Mid-Atlantic Ridge, TAG hydrothermal field
67770	Black smoker chimney in the TAG field in the Mid Atlantic Ridge

Taxonmaps

69479

Global distribution of 16S sequence AB468957 (>99% sequence identity) for Thioprofundum lithotrophicum from Microbeatlas

Aquatic Samples	33
Soil Samples	2
Animal Samples	14
Plant Samples	1
Total Samples	50

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8067	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8067	Thioprofundum lithotrophicum gene for 16S rRNA, partial sequence, strain: 106	AB468957	1487		571898

GC content

@ref	GC-content (mol%)	Method
8067	66	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

References

#8067	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19353
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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