Name: Thioprofundum hispidum gps61
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17848

Type strain:

Species: Thioprofundum hispidum

Strain Designation: gps61

Culture col. no.: DSM 18546, NBRC 101261

Strain history: <- K. Mori, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Japan; gps61 <- K. Mori and S. Hanada {2003}

NCBI tax ID(s): 394805 (species)

SI-ID 402004

DSM 18546

Section

Thioprofundum hispidum gps61 is a microaerophile, mesophilic bacterium that was isolated from rock samples collected from the hydrothermal field.

mesophilic
microaerophile
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Thioprofundaceae*
	Genus	*Thioprofundum*
	Species	**Thioprofundum hispidum**
	Full Scientific Name (LPSN)	Thioprofundum hispidum Mori et al. 2011

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7584]

Culture medium

SULFURIMONAS MJ MEDIUM (DSMZ Medium 1011)

[Ref.: #7584]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7584]			growth	37 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

microaerophile

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7584]	Sample type/isolated from	rock samples collected from the hydrothermal field
[Ref.: #7584]	Geographic location (country and/or sea, region)	Pacific Ocean, Izu-Bonin Arc, Suiyo Seamount
[Ref.: #7584]	Country	Japan
[Ref.: #7584]	Country ISO 3 Code	JPN
[Ref.: #7584]	Continent	Asia
[Ref.: #7584]	Geographic location	28.5667°/140.6500°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Terrestrial	#Geologic
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB266389 (>99% sequence identity) for Thioprofundum hispidum from Microbeatlas

Aquatic Samples	386
Soil Samples	68
Animal Samples	7
Plant Samples	8
Total Samples	469

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7584]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7584]	Thioprofundum hispidum gene for 16S rRNA, partial sequence	AB266389	1525	ENA	394805 tax ID

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GC-content

62.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #7584]

Culture collection no.

DSM 18546, NBRC 101261

[Ref.: #86839]

SI-ID 402004

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thioprofundum hispidum sp. nov., an obligately chemolithoautotrophic sulfur-oxidizing gammaproteobacterium isolated from the hydrothermal field on Suiyo Seamount, and proposal of Thioalkalispiraceae fam. nov. in the order Chromatiales.	Mori K, Suzuki KI, Urabe T, Sugihara M, Tanaka K, Hamada M, Hanada S	Int J Syst Evol Microbiol	10.1099/ijs.0.026963-0	2010	*

References

#7584

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18546

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86839

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402004.1 )

* These data were automatically processed and therefore are not curated

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