Schleiferia thermophila (DSM 21410, JCM 30197, LMG 24594)

Name: Schleiferia thermophila (DSM 21410, JCM 30197, LMG 24594)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17844

Type strain

Strain Designation TU-20

Culture col. no. DSM 21410 JCM 30197 LMG 24594 TU-20

NCBI tax ID(s) 884107

Special Collections DSMZ JCM

History DSMZ <- M. da Costa, Univ. Coimbra, Portugal; TU-20 <- L. Albuquerque JCM <-- DSM 21410 <-- L. Albuquerque and M. S. da Costa; Univ. Coimbra, Portugal; TU-20.

Links

Schleiferia thermophila TU-20 is a bacterium that was isolated from water from a hot spring.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 344039

JCM 30197,LMG 24594,DSM 21410

@ref 20215

Last LPSN update 2026-05-29 08:29:06

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Schleiferiaceae

Genus Schleiferia

Species Schleiferia thermophila

Full scientific name Schleiferia thermophila Albuquerque et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125438	negative	98.5
125439		92.118

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15689	MODIFIED THERMUS 162 MEDIUM (DSMZ Medium 630)		Medium recipe at MediaDive	Name: MODIFIED THERMUS 162 MEDIUM (DSMZ Medium 630) Composition: Agar 28.0 g/l Na2HPO4 x 12 H2O 4.3 g/l Yeast extract 2.5 g/l Tryptone 2.5 g/l KH2PO4 0.544 g/l MgCl2 x 6 H2O 0.2 g/l CaSO4 x 2 H2O 0.04 g/l Nitrilotriacetic acid 0.0064 g/l Fe(III) citrate 0.00122472 g/l FeCl2 x 4 H2O 0.0005 g/l MnCl2 x 4 H2O 0.00025 g/l CoCl2 x 4 H2O 0.00015 g/l CuCl2 x 2 H2O 2.5e-05 g/l Na2MoO4 x 2 H2O 2.5e-05 g/l H3BO3 1e-05 g/l NiCl2 x 6 H2O 1e-05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
15689	positive	growth	45
67770	positive	growth	45

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.456
125438		93.378

Observation

67770

Observationquinones: MK-6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15689	water from a hot spring	Azores, Island of São Miguel, Furnas	Portugal	PRT	Europe
67770	Hot spring at Furnas on the Island of São Miguel in the Azores

Taxonmaps

69479

Global distribution of 16S sequence HQ172900 (>99% sequence identity) for Schleiferia thermophila subclade from Microbeatlas

Aquatic Samples	962
Soil Samples	197
Animal Samples	170
Plant Samples	16
Total Samples	1345

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15689	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM386517v1 assembly for Schleiferia thermophila JCM 30197	contig	GCA_003865175	884107.4	8117158081	884107	73.26
67770	ASM333743v1 assembly for Schleiferia thermophila DSM 21410	scaffold	GCA_003337435	884107.3	2770939492	884107	73.23

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15689	Schleiferia thermophila strain TU-20 16S ribosomal RNA gene, partial sequence	HQ172900	1499		884107

GC content

@ref	GC-content (mol%)	Method
15689	42.8	high performance liquid chromatography (HPLC)
67770	42.9	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM386517v1 assembly for Schleiferia thermophila JCM 30197
BV-BRC: 884107.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	80.22	no
125439	gram_stain	BacteriaNetⓘ	negative	74.90	no
125439	spore_formation	BacteriaNetⓘ	no	99.46	no
125439	motility	BacteriaNetⓘ	no	92.12	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Schleiferia thermophila strain DSM 21410
PATRIC: 884107.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	93.76	no
125438	aerobic	aerobicⓘ	yes	81.99	no
125438	spore-forming	spore-formingⓘ	no	93.38	no
125438	thermophilic	thermophileⓘ	no	88.58	no
125438	flagellated	motile2+ⓘ	no	86.91	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermaurantimonas aggregans gen. nov., sp. nov., a moderately thermophilic heterotrophic aggregating bacterium isolated from microbial mats at a terrestrial hot spring.	Iino T, Kawai S, Yuki M, Dekio I, Ohkuma M, Haruta S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003888	2020
Phylogeny	Schleiferia thermophila gen. nov., sp. nov., a slightly thermophilic bacterium of the phylum 'Bacteroidetes' and the proposal of Schleiferiaceae fam. nov.	Albuquerque L, Rainey FA, Nobre MF, da Costa MS	Int J Syst Evol Microbiol	10.1099/ijs.0.028852-0	2010

References

#15689	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21410
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Schleiferia thermophila (DSM 21410, JCM 30197, LMG 24594)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003865175

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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