Name: Schleiferia thermophila TU-20
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17844

Type strain:

Species: Schleiferia thermophila

Strain Designation: TU-20

Culture col. no.: DSM 21410, JCM 30197, LMG 24594

Strain history: DSM 21410 <-- L. Albuquerque and M. S. da Costa; Univ. Coimbra, Portugal; TU-20.

NCBI tax ID(s): 884107 (species)

SI-ID 344039

LMG 24594, DSM 21410

Special Collections

DSMZ
JCM

Section

Schleiferia thermophila TU-20 is a Gram-negative bacterium that was isolated from water from a hot spring.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Schleiferiaceae*
	Genus	*Schleiferia*
	Species	**Schleiferia thermophila**
	Full Scientific Name (LPSN)	Schleiferia thermophila Albuquerque et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15689]

Culture medium

MODIFIED THERMUS 162 MEDIUM (DSMZ Medium 630)

[Ref.: #15689]

Culture medium growth

[Ref.: #15689]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15689]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15689]			growth	45 °C
[Ref.: #67770]			growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %93.378
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15689]	Sample type/isolated from	water from a hot spring
[Ref.: #15689]	Geographic location (country and/or sea, region)	Azores, Island of São Miguel, Furnas
[Ref.: #15689]	Country	Portugal
[Ref.: #15689]	Country ISO 3 Code	PRT
[Ref.: #15689]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Hot spring at Furnas on the Island of São Miguel in the Azores
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ172900 (>99% sequence identity) for Schleiferia thermophila subclade from Microbeatlas

Aquatic Samples	962
Soil Samples	197
Animal Samples	170
Plant Samples	16
Total Samples	1345

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15689]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15689]	Schleiferia thermophila strain TU-20 16S ribosomal RNA gene, partial sequence	HQ172900	1499	GenBank ENA	884107 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Schleiferia thermophila JCM 30197	GCA_003865175	contig	GenBank ENA	884107 tax ID
[Ref.: #67770]	Schleiferia thermophila DSM 21410	GCA_003337435	scaffold	GenBank ENA	884107 tax ID
[Ref.: #66792]	Schleiferia thermophila strain DSM 21410	884107.3	wgs	PATRIC	884107 tax ID	*
[Ref.: #66792]	Schleiferia thermophila strain JCM 30197	884107.4	wgs	PATRIC	884107 tax ID	*
[Ref.: #66792]	Schleiferia thermophila DSM 21410	2770939492	draft	JGI IMG/M	884107 tax ID	*

[Ref.: #15689]	GC-content	42.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	42.9 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Schleiferia thermophila DSM 21410 NCBI: GCA_003337435.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Schleiferia thermophila strain DSM 21410 PATRIC: 884107.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.759	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	81.994	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.378	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	88.577	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86.906	no

Availability in culture collections External links

[Ref.: #15689]

Culture collection no.

DSM 21410, JCM 30197, LMG 24594

[Ref.: #86835]

SI-ID 344039

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermaurantimonas aggregans gen. nov., sp. nov., a moderately thermophilic heterotrophic aggregating bacterium isolated from microbial mats at a terrestrial hot spring.	Iino T, Kawai S, Yuki M, Dekio I, Ohkuma M, Haruta S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003888	2020	*
Phylogeny	Schleiferia thermophila gen. nov., sp. nov., a slightly thermophilic bacterium of the phylum 'Bacteroidetes' and the proposal of Schleiferiaceae fam. nov.	Albuquerque L, Rainey FA, Nobre MF, da Costa MS	Int J Syst Evol Microbiol	10.1099/ijs.0.028852-0	2010	*

References

#15689

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21410

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86835

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID344039.1 )

* These data were automatically processed and therefore are not curated

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Schleiferia thermophila DSM 21410

Schleiferia thermophila strain DSM 21410

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