Name: Rhodothermus marinus R-18
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17793

Type strain:

Species: Rhodothermus marinus

Strain Designation: R-18

Culture col. no.: DSM 4253

Strain history: <- G.A. Alfredsson, Univ. of Iceland

NCBI tax ID(s): 29549 (species)

SI-ID 47819

DSM 4253

Other strains from Rhodothermus marinus

R. marinus R-10, DSM 4252, ATCC 43812 (type strain)
R. marinus OKD7, DSM 12399, JCM 9785, CGMCC ...
R. marinus DSM 16675, PRI 493
R. marinus JCM 33045
R. marinus JCM 33046

Section

Rhodothermus marinus R-18 is a thermophilic bacterium that was isolated from submarine hot spring.

thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Rhodothermota*
	Class	*Rhodothermia*
	Order	*Rhodothermales*
	Family	*Rhodothermaceae*
	Genus	*Rhodothermus*
	Species	**Rhodothermus marinus**
	Full Scientific Name (LPSN)	Rhodothermus marinus Alfredsson et al. 1995

Synonym

Rhodothermus obamensis

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1633]

Culture medium

MODIFIED THERMUS 162 MEDIUM (DSMZ Medium 630)

[Ref.: #1633]

Culture medium growth

[Ref.: #1633]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1633]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1633]			growth	65 °C

[Ref.: #1633]

Temperature range

thermophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1633]	Sample type/isolated from	submarine hot spring
[Ref.: #1633]	Country	Iceland
[Ref.: #1633]	Country ISO 3 Code	ISL
[Ref.: #1633]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF217495 (>99% sequence identity) for Rhodothermus marinus from Microbeatlas

Aquatic Samples	243
Soil Samples	193
Animal Samples	134
Plant Samples	31
Total Samples	601

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1633]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1633]	Rhodothermus marinus strain DSM 4253 16S ribosomal RNA gene, partial sequence	AF217495	1471	ENA	29549 tax ID

[Ref.: #1633]

GC-content

65.0 mol%

Availability in culture collections External links

[Ref.: #1633]

Culture collection no.

DSM 4253

[Ref.: #86784]

SI-ID 47819

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Characterization and diversity of the complete set of GH family 3 enzymes from Rhodothermus marinus DSM 4253.	Ara KZG, Manberger A, Gabrisko M, Linares-Pasten JA, Jasilionis A, Friethjonsson OH, Hreggviethsson GO, Janecek S, Nordberg Karlsson E	Sci Rep	10.1038/s41598-020-58015-5	2020	*
	Characterization of carotenoids in Rhodothermus marinus.	Ron EYC, Plaza M, Kristjansdottir T, Sardari RRR, Bjornsdottir SH, Gudmundsson S, Hreggvidsson GO, Turner C, van Niel EWJ, Nordberg-Karlsson E	Microbiologyopen	10.1002/mbo3.536	2017	*

References

#1633

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4253

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86784

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47819.1 )

* These data were automatically processed and therefore are not curated

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