Strain identifier
BacDive ID: 17793
Type strain: 
Species: Rhodothermus marinus
Strain Designation: R-18
Strain history: <- G.A. Alfredsson, Univ. of Iceland
NCBI tax ID(s): 29549 (species)
version 9 (current version)
General
@ref: 1633
BacDive-ID: 17793
DSM-Number: 4253
keywords: 16S sequence, Bacteria
description: Rhodothermus marinus R-18 is a bacterium that was isolated from submarine hot spring.
NCBI tax id
- NCBI tax id: 29549
- Matching level: species
strain history
- @ref: 1633
- history: <- G.A. Alfredsson, Univ. of Iceland
doi: 10.13145/bacdive17793.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/rhodothermota
- domain: Bacteria
- phylum: Rhodothermota
- class: Rhodothermia
- order: Rhodothermales
- family: Rhodothermaceae
- genus: Rhodothermus
- species: Rhodothermus marinus
- full scientific name: Rhodothermus marinus Alfredsson et al. 1995
synonyms
- @ref: 20215
- synonym: Rhodothermus obamensis
@ref: 1633
domain: Bacteria
phylum: Rhodothermaeota
class: Rhodothermia
order: Cytophagales
family: Rhodothermaceae
genus: Rhodothermus
species: Rhodothermus marinus
full scientific name: Rhodothermus marinus Alfredsson et al. 1995 emend. Park et al. 2019
strain designation: R-18
type strain: no
Culture and growth conditions
culture medium
- @ref: 1633
- name: MODIFIED THERMUS 162 MEDIUM (DSMZ Medium 630)
- growth: yes
- link: https://mediadive.dsmz.de/medium/630
- composition: Name: MODIFIED THERMUS 162 MEDIUM (DSMZ Medium 630; with strain-specific modifications) Composition: Agar 28.0 g/l NaCl 10.0 g/l Na2HPO4 x 12 H2O 4.3 g/l Yeast extract 2.5 g/l Tryptone 2.5 g/l KH2PO4 0.544 g/l MgCl2 x 6 H2O 0.2 g/l CaSO4 x 2 H2O 0.04 g/l Nitrilotriacetic acid 0.0064 g/l Fe(III) citrate 0.00122472 g/l FeCl2 x 4 H2O 0.0005 g/l MnCl2 x 4 H2O 0.00025 g/l CoCl2 x 4 H2O 0.00015 g/l CuCl2 x 2 H2O 2.5e-05 g/l Na2MoO4 x 2 H2O 2.5e-05 g/l H3BO3 1e-05 g/l NiCl2 x 6 H2O 1e-05 g/l Distilled water
culture temp
- @ref: 1633
- growth: positive
- type: growth
- temperature: 65
Isolation, sampling and environmental information
isolation
- @ref: 1633
- sample type: submarine hot spring
- country: Iceland
- origin.country: ISL
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_7548.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_302;96_1200;97_1415;98_1722;99_7548&stattab=map
- Last taxonomy: Rhodothermus marinus
- 16S sequence: AF217495
- Sequence Identity:
- Total samples: 601
- soil counts: 193
- aquatic counts: 243
- animal counts: 134
- plant counts: 31
Safety information
risk assessment
- @ref: 1633
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 1633
- description: Rhodothermus marinus strain DSM 4253 16S ribosomal RNA gene, partial sequence
- accession: AF217495
- length: 1471
- database: nuccore
- NCBI tax ID: 29549
GC content
- @ref: 1633
- GC-content: 65.0
External links
@ref: 1633
culture collection no.: DSM 4253
straininfo link
- @ref: 86784
- straininfo: 47819
literature
| Pubmed-ID | title | authors | journal | DOI | year | mesh | topic | topic2 |
|---|---|---|---|---|---|---|---|---|
| 29045010 | Characterization of carotenoids in Rhodothermus marinus. | Ron EYC, Plaza M, Kristjansdottir T, Sardari RRR, Bjornsdottir SH, Gudmundsson S, Hreggvidsson GO, Turner C, van Niel EWJ, Nordberg-Karlsson E | Microbiologyopen | 10.1002/mbo3.536 | 2017 | Antioxidants/analysis/chemistry, Aquatic Organisms/chemistry/growth & development, Bioreactors/microbiology, Carotenoids/*analysis/chemistry, Chromatography, High Pressure Liquid, Mass Spectrometry, Rhodothermus/*chemistry/growth & development | ||
| 31992772 | Characterization and diversity of the complete set of GH family 3 enzymes from Rhodothermus marinus DSM 4253. | Ara KZG, Manberger A, Gabrisko M, Linares-Pasten JA, Jasilionis A, Friethjonsson OH, Hreggviethsson GO, Janecek S, Nordberg Karlsson E | Sci Rep | 10.1038/s41598-020-58015-5 | 2020 | Enzyme Activation, Gene Order, Genes, Bacterial, Genetic Loci, Glycoside Hydrolases/chemistry/classification/*genetics/*metabolism, Hydrogen-Ion Concentration, Hydrolysis, Kinetics, Models, Molecular, *Multigene Family, Protein Conformation, Rhodothermus/*enzymology/*genetics, Structure-Activity Relationship, Temperature | Enzymology | Phylogeny |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 1633 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4253) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4253 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 86784 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47819.1 | StrainInfo: A central database for resolving microbial strain identifiers |