Name: Thermanaerovibrio velox Z-9701
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17781

Type strain:

Species: Thermanaerovibrio velox

Strain Designation: Z-9701

Culture col. no.: DSM 12556

Strain history: <- D. G. Zavarzina, Russian Academy of Sciences, Inst. of Microbiology, Moscow, Russia; Z-9701 <- D. G. Zavarzina {1997}

NCBI tax ID(s): 926567 (strain), 108007 (species)

SI-ID 49315

DSM 12556

Section

Thermanaerovibrio velox Z-9701 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from cyanobacterial mat of hot spring.

Gram-negative
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Synergistota*
	Class	*Synergistia*
	Order	*Synergistales*
	Family	*Synergistaceae*
	Genus	*Thermanaerovibrio*
	Species	**Thermanaerovibrio velox**
	Full Scientific Name (LPSN)	Thermanaerovibrio velox Zavarzina et al. 2000

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.806

Multimedia content

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Caption:

electron microscopic image

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

THERMOANAEROVIBRIO MEDIUM (DSMZ Medium 873)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4764]			growth	60 °C

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Temperature range

thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4764]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.414

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.983

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4764]	Sample type/isolated from	cyanobacterial mat of hot spring
[Ref.: #4764]	Geographic location (country and/or sea, region)	Kamchatka, Uzon caldera
[Ref.: #4764]	Country	Russia
[Ref.: #4764]	Country ISO 3 Code	RUS
[Ref.: #4764]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Environmental	#Microbial community	#Microbial mat
#Host	#Microbial	#Bacteria
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR733707 (>99% sequence identity) for Thermanaerovibrio velox subclade from Microbeatlas

Aquatic Samples	323
Soil Samples	131
Animal Samples	956
Plant Samples	11
Total Samples	1421

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4764]	Thermanaerovibrio velox partial 16S rRNA gene, type strain DSM12556T	FR733707	1512	ENA	108007 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermanaerovibrio velox DSM 12556	GCA_000237825	chromosome	GenBank	926567 tax ID	*
[Ref.: #66792]	Thermanaerovibrio velox DSM 12556	926567.3	wgs	PATRIC	926567 tax ID	*
[Ref.: #66792]	Thermanaerovibrio velox DSM 12556	2508501068	draft	JGI IMG/M	926567 tax ID	*

[Ref.: #4764]	GC-content	54.6 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #4764]	GC-content	58.8 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermanaerovibrio velox DSM 12556 DSM 12556 NCBI: GCA_000237825.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermanaerovibrio velox DSM 12556 DSM 12556 NCBI: GCA_000237825.1
[Ref.: #69480]	motile	yes	91.95	no
[Ref.: #69480]	flagellated	no	84.434	no
[Ref.: #69480]	gram-positive	no	98.86	no
[Ref.: #69480]	anaerobic	yes	99.695	yes
[Ref.: #69480]	aerobic	no	98.309	yes
[Ref.: #69480]	halophile	no	89.809	no
[Ref.: #69480]	spore-forming	no	93.309	no
[Ref.: #69480]	thermophile	yes	99.683	yes
[Ref.: #69480]	glucose-util	yes	77.116	no
[Ref.: #69480]	glucose-ferment	yes	51.251	no

Availability in culture collections External links

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Culture collection no.

DSM 12556

[Ref.: #86772]

SI-ID 49315

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio.	Palaniappan K, Meier-Kolthoff JP, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Rohde M, Mayilraj S, Spring S, Detter JC, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T	Stand Genomic Sci	10.4056/sigs.4237901	2013	*
Phylogeny	Thermanaerovibrio velox sp. nov., a new anaerobic, thermophilic, organotrophic bacterium that reduces elemental sulfur, and emended description of the genus Thermanaerovibrio.	Zavarzina DG, Zhilina TN, Tourova TP, Kuznetsov BB, Kostrikina NA, Bonch-Osmolovskaya EA	Int J Syst Evol Microbiol	10.1099/00207713-50-3-1287	2000	*

References

#4764

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12556

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86772

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49315.1 )

* These data were automatically processed and therefore are not curated

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Thermanaerovibrio velox DSM 12556 DSM 12556

Thermanaerovibrio velox DSM 12556 DSM 12556

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