Thermanaerovibrio velox (DSM 12556, Z-9701)

Name: Thermanaerovibrio velox (DSM 12556, Z-9701)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17781

Type strain

Strain Designation Z-9701

Culture col. no. DSM 12556 Z-9701

NCBI tax ID(s) 926567 108007

Special Collections DSMZ

History <- D. G. Zavarzina, Russian Academy of Sciences, Inst. of Microbiology, Moscow, Russia; Z-9701 <- D. G. Zavarzina {1997}

Links

Thermanaerovibrio velox Z-9701 is an anaerobe, thermophilic prokaryote that was isolated from cyanobacterial mat of hot spring.

anaerobe thermophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 49315

DSM 12556

@ref 20215

Last LPSN update 2026-02-09 11:22:18

Domain Bacteria

Phylum Synergistota

Class Synergistia

Order Synergistales

Family Synergistaceae

Genus Thermanaerovibrio

Species Thermanaerovibrio velox

Full scientific name Thermanaerovibrio velox Zavarzina et al. 2000

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	92.1

Multimedia

@ref:	66793
multimedia content:	EM_DSM_12556_1.jpg
multimedia.multimedia content:	EM_DSM_12556_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4764	THERMOANAEROVIBRIO MEDIUM (DSMZ Medium 873)		Medium recipe at MediaDive	Name: THERMOANAEROVIBRIO MEDIUM (DSMZ Medium 873) Composition: D-Glucose 2.99401 g/l Na2CO3 1.49701 g/l NaHCO3 0.798403 g/l Na2S x 9 H2O 0.499002 g/l MgCl2 x 6 H2O 0.329341 g/l KCl 0.329341 g/l KH2PO4 0.329341 g/l NH4Cl 0.329341 g/l Yeast extract 0.249501 g/l Peptone 0.249501 g/l CaCl2 x 2 H2O 0.219561 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l MnCl2 x 4 H2O 9.98004e-05 g/l Pyridoxine hydrochloride 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l Thiamine HCl 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l Biotin 1.99601e-05 g/l Folic acid 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4764	positive	growth	60	thermophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
4764	anaerobe
125438	anaerobe	93.8
125439	anaerobe	99.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Thermal spring
#Environmental	#Microbial community	#Microbial mat
#Host	#Microbial	#Bacteria
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
4764	cyanobacterial mat of hot spring	Kamchatka, Uzon caldera	Russia	RUS	Asia

Taxonmaps

69479

Global distribution of 16S sequence FR733707 (>99% sequence identity) for Thermanaerovibrio velox subclade from Microbeatlas

Aquatic Samples	323
Soil Samples	131
Animal Samples	956
Plant Samples	11
Total Samples	1421

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4764	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM23782v1 assembly for Thermanaerovibrio velox DSM 12556	chromosome	GCA_000237825	926567.3	2508501068	926567	86.98

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
4764	Thermanaerovibrio velox partial 16S rRNA gene, type strain DSM12556T	FR733707	1512		108007

GC content

@ref	GC-content (mol%)	Method
4764	54.6	thermal denaturation, midpoint method (Tm)
4764	58.8	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Thermanaerovibrio velox DSM 12556
PATRIC: 926567.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	87.80	no
125439	motility	BacteriaNetⓘ	yes	57.20	no
125439	gram_stain	BacteriaNetⓘ	negative	92.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Thermanaerovibrio velox DSM 12556 DSM 12556
NCBI: GCA_000237825.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	86.04	no
125438	anaerobic	anaerobicⓘ	yes	93.80	no
125438	aerobic	aerobicⓘ	no	96.69	yes
125438	spore-forming	spore-formingⓘ	no	76.01	no
125438	thermophilic	thermophileⓘ	yes	53.50	yes
125438	flagellated	motile2+ⓘ	yes	65.37	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Identification of a Putative CodY Regulon in the Gram-Negative Phylum Synergistetes.	Geng J, Luo S, Shieh HR, Wang HY, Hu S, Chen YM.	Int J Mol Sci	10.3390/ijms23147911	2022
Genetics	Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio.	Palaniappan K, Meier-Kolthoff JP, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Rohde M, Mayilraj S, Spring S, Detter JC, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T	Stand Genomic Sci	10.4056/sigs.4237901	2013
Phylogeny	Thermanaerovibrio velox sp. nov., a new anaerobic, thermophilic, organotrophic bacterium that reduces elemental sulfur, and emended description of the genus Thermanaerovibrio.	Zavarzina DG, Zhilina TN, Tourova TP, Kuznetsov BB, Kostrikina NA, Bonch-Osmolovskaya EA	Int J Syst Evol Microbiol	10.1099/00207713-50-3-1287	2000

References

#4764	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12556
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Thermanaerovibrio velox (DSM 12556, Z-9701)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000237825

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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